Locus 5656

Sequence ID 2L_DroMel_CAF1
Location 16,044,909 – 16,045,003
Length 94
Max. P 0.542955
window8965

overview

Window 5

Location 16,044,909 – 16,045,003
Length 94
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 84.19
Mean single sequence MFE -21.98
Consensus MFE -15.25
Energy contribution -15.97
Covariance contribution 0.72
Combinations/Pair 1.05
Mean z-score -2.10
Structure conservation index 0.69
SVM decision value 0.02
SVM RNA-class probability 0.542955
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16044909 94 - 22407834
AAUCAUAAAAAUUUGCAAUUAUGCUGAUG----CAACACGGUAGCA-------ACCACCGGCAACUGGAGCAAAACAUUUCCAGUUCAUUAGCUCAGCC------AC-GCCC
......................(((((.(----(....((((....-------...))))(.((((((((........)))))))))....))))))).------..-.... ( -22.40)
>DroSec_CAF1 220563 94 - 1
AAUCAUAAAAAUUUGCAAUUAUGCUGAUG----CAACACGGUAGCA-------ACCACCGGCAACUGGAGCAAAACAUUUCCAGUUCAUUAGCUCAGCC------AC-GCCC
......................(((((.(----(....((((....-------...))))(.((((((((........)))))))))....))))))).------..-.... ( -22.40)
>DroSim_CAF1 226379 94 - 1
AAUCAUAAAAAUUUGCAAUUAUGCUGAUG----CAACACGGUAGCA-------ACCACCGGCAACUGGAGCAAAACAUUUCCAGUUCAUUAGCUCAGCC------AC-GCCC
......................(((((.(----(....((((....-------...))))(.((((((((........)))))))))....))))))).------..-.... ( -22.40)
>DroEre_CAF1 209499 90 - 1
AAUCAUAAAAAUUUGCAAUUAUGCUGAUG----CAACACGGUAGCA-------ACCACCGGCAACUGGAGCAAAACAUUUCCAGUUCAU-----------CAGCCACGGCCC
..............((......(((((((----.....((((....-------...))))..((((((((........)))))))))))-----------))))....)).. ( -23.10)
>DroYak_CAF1 206888 108 - 1
AAUCAUAAAAAUUUGCAAUUAUGCUGAUG----CAACACGGUAGCAACCGGCAACCACCGGCAACUGGAGCAAAACAUUUCCAGUUCAUUAGCUCAGCCACAGCCACAGUCC
..............((.....(((....)----))....((((((..((((......)))).((((((((........)))))))).....)))..)))...))........ ( -24.50)
>DroAna_CAF1 154285 98 - 1
AAUCAUAAAAAUUUGCAAUUAUGCUGAUGACCGCAGUACAGCAAGA-------GCCACUGACAACUGGAGUAAGUCAUUUGCAGUUCAUUAGCCCCACC------AC-GCCC
......................((((((((..(((((...((....-------)).)))).).((((.((........)).))))))))))))......------..-.... ( -17.10)
>consensus
AAUCAUAAAAAUUUGCAAUUAUGCUGAUG____CAACACGGUAGCA_______ACCACCGGCAACUGGAGCAAAACAUUUCCAGUUCAUUAGCUCAGCC______AC_GCCC
......................(((((((.........((((..............))))..((((((((........)))))))))))))))................... (-15.25 = -15.97 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:28 2006