Locus 5654

Sequence ID 2L_DroMel_CAF1
Location 16,043,194 – 16,043,293
Length 99
Max. P 0.625106
window8962

overview

Window 2

Location 16,043,194 – 16,043,293
Length 99
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 76.95
Mean single sequence MFE -41.97
Consensus MFE -24.03
Energy contribution -26.72
Covariance contribution 2.68
Combinations/Pair 1.25
Mean z-score -1.59
Structure conservation index 0.57
SVM decision value 0.19
SVM RNA-class probability 0.625106
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16043194 99 + 22407834
GCUGCUGGGGCUGAGUAAUUCCAACGGUGGAGGAGGUAACUCCG---GAGGAGCCCACCUCCUGCCCGGCAGUGCCGAGAGCUAUCGGAGUUUGCACUAUGA
(((((((((..........((((....))))((((....))))(---((((......)))))..))))))))).((((......)))).............. ( -39.80)
>DroVir_CAF1 222529 84 + 1
GCUGUUGGGUCUGGGCAAUGCCA----CG--------------GGCGGGGGGGCACAUCUGUUGCCCGGCAGCGCCGAAAGCUAUCGCAAUCUGCACUAUGA
((((((..((((((((...))).----))--------------))).(((.((((....)))).)))))))))((.((..((....))..)).))....... ( -31.50)
>DroSec_CAF1 218825 102 + 1
GCUGCUGGGGCUGGGUAAUUCCAGCGGUGGAGGAGGUAACUCCGGUGGAGGAGCCCACCUCCUGCCCGGCAGUGCCGAGAGCUAUCGGAGUUUGCACUAUGA
(((((((((((((((....))))))...(((((.(((..((((...))))..)))..)))))..))))))))).((((......)))).............. ( -50.00)
>DroSim_CAF1 224642 102 + 1
GCUGCUGGGGCUGGGUAAUUCCAGCGGUGGAGGAGGUAACUCCGGUGGAGGAGCCCACCUCCUGCCCGGCAGUGCCGAGAGCUAUCGGAGUUUGCACUAUGA
(((((((((((((((....))))))...(((((.(((..((((...))))..)))..)))))..))))))))).((((......)))).............. ( -50.00)
>DroYak_CAF1 205033 102 + 1
ACUUCUGGGGCUGGGCAAUUCCAGCGGUGGAGGAGCCAACUCUGGGGGCGGAGCUCACCUCCUGCCCGGCAGCGCCGAGAGCUAUCGGAGUUUGCACUAUGA
.((((((..((((((....))))))..)))))).((.((((((((((((((((.....)))).))))(((...)))........)))))))).))....... ( -43.40)
>DroPer_CAF1 281330 84 + 1
UCUUCUGGGCCUGGGCAACUCCGG------------------AGGCGGCGGAGCCCACCUGCUGCCCGGUAGUGCAGAGAGCUAUCGCAGCCUGCACUACGA
...(((((....((....))))))------------------)((((((((.......))))))))..(((((((((...((....))...))))))))).. ( -37.10)
>consensus
GCUGCUGGGGCUGGGCAAUUCCAGCGGUGGAGGAGGUAACUCCGGCGGAGGAGCCCACCUCCUGCCCGGCAGUGCCGAGAGCUAUCGGAGUUUGCACUAUGA
(((((((((((((((....))))))......((((....))))...(((((......)))))..))))))))).((((......)))).............. (-24.03 = -26.72 +   2.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:25 2006