| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,042,261 – 16,042,355 |
| Length | 94 |
| Max. P | 0.513710 |
| Location | 16,042,261 – 16,042,355 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 82.51 |
| Mean single sequence MFE | -26.58 |
| Consensus MFE | -19.99 |
| Energy contribution | -20.22 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.75 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513710 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16042261 94 + 22407834 GUCUACAUCACGUUGCGCCAGAAACAGCGGCAGAGCACCCUGGCCAUUGUGGUCAAGGGAGUGGAGAAGUUUAUAGGUAAGAUCU-CUAAAGCAA-------- .(((((.....(((((..........)))))......((((((((.....)))).)))).)))))...((((.((((.......)-)))))))..-------- ( -25.40) >DroSec_CAF1 217966 94 + 1 GUCUACAUCACGUUGCGCCAAAAACAGCGGCAGAGCACCCUGGCCAUUGUGGUCAAGGGAGUGGAGAAGUUUAUAGGUAAGAUUU-UAAAAACAA-------- .(((((.....(((((..........)))))......((((((((.....)))).)))).)))))...((((.((((......))-)).))))..-------- ( -25.40) >DroSim_CAF1 223811 91 + 1 GUCUACAUCACGUUGCGCCAAAAACAGCGGCAGAGCACCCUGGCCAUUGUGGUCAAGGGAGUGGAGAAGUUUAUAGGUAAAAUUU-CUAAAA----------- .(((((.....(((((..........)))))......((((((((.....)))).)))).)))))(((((((.......))))))-).....----------- ( -26.20) >DroEre_CAF1 206679 85 + 1 GUGUACAUCACGUUGCGCCAAAAGCAGCGGCAGAGCACCCUGGCCAUUGUGGUCAAGGGAGUGGAGAAGUUUAUAGGUGAGUCUU------------------ .....((((.((((((.......)))))).....((.((((((((.....)))).)))).)).............))))......------------------ ( -26.10) >DroYak_CAF1 203955 103 + 1 GUAUACAUCACGUUGCGUCAAAAACAGCGACAGAGCACCCUGGCCAUUGUGGUCAAGGGAGUGGAGAAAUUUAUAGGUAAGUUUCUCUUAAGAAAAGCUGUAA ...(((.....(((((..........)))))..(((.((((((((.....)))).))))...(((((((((((....)))))))))))........)))))). ( -32.50) >DroAna_CAF1 151542 97 + 1 GUGUACAUCACCCUGCGCCAGAAGCAGCGCCAAAGCACCCUGGCCAUUGUGGUCAAGGGCGUGGAGAAGUUUAUAGGUAAGUC----CAAAAAAAAGACCU-- (((.((.((.((..((((........))))....((.((((((((.....)))).)))).)))).)).)).))).((.....)----).............-- ( -23.90) >consensus GUCUACAUCACGUUGCGCCAAAAACAGCGGCAGAGCACCCUGGCCAUUGUGGUCAAGGGAGUGGAGAAGUUUAUAGGUAAGAUUU_CUAAAA_AA________ .......(((((((((..........)))))......((((((((.....)))).)))).))))....................................... (-19.99 = -20.22 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:24 2006