Locus 5652

Sequence ID 2L_DroMel_CAF1
Location 16,038,740 – 16,038,838
Length 98
Max. P 0.925646
window8960

overview

Window 0

Location 16,038,740 – 16,038,838
Length 98
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 81.82
Mean single sequence MFE -36.88
Consensus MFE -26.09
Energy contribution -28.29
Covariance contribution 2.20
Combinations/Pair 1.17
Mean z-score -3.03
Structure conservation index 0.71
SVM decision value 1.17
SVM RNA-class probability 0.925646
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16038740 98 - 22407834
GAUUUCGUCGAUCGAUUUUGCCCGCUGCU-CGACGGCAUUUACU-UCUAACUGUUGAGCGGAUGAAUUCCGCAAAUCGCUGGCAGGAGAAAAUCUGGCGA
....((((((((...(((((((.((.(((-((((((........-.....)))))))))(((.....))).......)).)))))))....))).))))) ( -34.22)
>DroSec_CAF1 214364 98 - 1
GAUUUCGCCGAUCGAUUUUGCCCGCUGUU-CGACGGCAUUUACU-UCUAACUGUUGAGCGGAUGAAUUCCGCAAACCGCUGGCAGGAGAAGAUCUGGCGA
....(((((((((..(((((((.((.(((-((((((........-.....)))))))(((((.....)))))..)).)).)))))))...)))).))))) ( -40.72)
>DroSim_CAF1 220266 98 - 1
GAUUUCGCCGAUCGAUUUUGCCCGCUGUU-CGACGGCAUUUACU-UCUAACUGUUGAGCGGAUGAAUUCCGCAAACCGCUGGCAGGAGAAGAUCUGGCGA
....(((((((((..(((((((.((.(((-((((((........-.....)))))))(((((.....)))))..)).)).)))))))...)))).))))) ( -40.72)
>DroEre_CAF1 203174 98 - 1
GAUUUCGCCGAUCGAUUUUGCCCGCUUUC-CGACGCCAGUUAGU-UCUAACUGUUGAGCGGAUGAAUUCCGCAUAUCGCUGGCAGGAGAAGAUCUGGCGA
....(((((((((..(((((((.((....-...((.((((((..-..)))))).)).(((((.....))))).....)).)))))))...)))).))))) ( -41.00)
>DroYak_CAF1 200516 99 - 1
GAUUUCGCCGAUCGAUUUUGCCCGCUGUU-CGACGGCAGUUAGUUUCUAACUGUUGAGCGGAUGAAUUCCGCAAAUCGCUGGCAGGAGAAGAUUGGGCGA
....(((((((((..(((((((.((....-...((((((((((...)))))))))).(((((.....))))).....)).)))))))...)))).))))) ( -43.80)
>DroAna_CAF1 148323 85 - 1
GAUUCCC---------UUUUCCCAAUUUCCCCACAGG----GGU-CCUAACUGUAGAACGGGUGGACUUCGCUAA-CGAUCGCAGGAGAAAUUCUCUUGA
.......---------.......((((((.((...((----(((-((...(((.....)))..)))))))((...-.....)).)).))))))....... ( -20.80)
>consensus
GAUUUCGCCGAUCGAUUUUGCCCGCUGUU_CGACGGCAUUUACU_UCUAACUGUUGAGCGGAUGAAUUCCGCAAAUCGCUGGCAGGAGAAGAUCUGGCGA
....(((((((((..(((((((.((.....((((((..............)))))).(((((.....))))).....)).)))))))...)))).))))) (-26.09 = -28.29 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:23 2006