Locus 5651

Sequence ID 2L_DroMel_CAF1
Location 16,025,188 – 16,025,288
Length 100
Max. P 0.723099
window8959

overview

Window 9

Location 16,025,188 – 16,025,288
Length 100
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 76.21
Mean single sequence MFE -21.02
Consensus MFE -10.76
Energy contribution -10.65
Covariance contribution -0.11
Combinations/Pair 1.18
Mean z-score -1.87
Structure conservation index 0.51
SVM decision value 0.40
SVM RNA-class probability 0.723099
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16025188 100 - 22407834
UCCA--GGCUUUUGGUUUAUUUUUCAAACAAUUUUUUAUCAUCAGCUGUCAAUAGUU-CAGGCAGCUG--CCC-ACAG---AAAGAAGCAGCCAAAACGGAAAAUAAGC
(((.--...((((((((..(((((((((......))).....((((((((.......-..))))))))--...-...)---)))))...)))))))).)))........ ( -21.40)
>DroPse_CAF1 226364 87 - 1
UCCA--UAUUUUUGGUUUAUUUUU-AAACCAUUUUUUAUCAUCAGCUGUCAAUAGUU-CGGGCAGCUGA-CCC-GCCA---AAAGGAGCAGCCAGA-------------
(((.--......(((((((....)-))))))..........(((((((((.......-..)))))))))-...-....---...))).........------------- ( -23.30)
>DroWil_CAF1 193408 107 - 1
CCCAUACAAUUUUGGUUUAUUUUUCAAACAAUUUUUUAUCAUCAACUGUCAAUAGUUCCAGGCAGCUG--UCCUACCAACAAAAUAAAAAGAAAGAAACGAAAAUUGGU
......(((((((.(((..((((((....................(((((..........))))).((--(.......))).........))))))))).))))))).. ( -15.40)
>DroYak_CAF1 186852 100 - 1
UCCA--GGCUCUUGGUUUAUUUUUCAAACAAUUUUUUAUCAUCAGCUGUCAAUAGUU-CAGGCAGCUG--CCC-ACAG---AAAGAAGCAGCCAAAACGGAAAAUAAGC
(((.--(((((((.((((.......))))..((((((.....((((((((.......-..))))))))--...-..))---))))))).)))).....)))........ ( -21.10)
>DroAna_CAF1 134783 94 - 1
CCUG--CGCUCUUGGUUUAUUUUUCAAACAAUUUUUUAUCAUCAGCUGUCAAUAGUU-CAGGCAGCUGACCCC-ACCU---AAAGGACCAACGA-------AACUG-CA
...(--((.(((((((.........................(((((((((.......-..)))))))))....-.((.---...))))))).))-------...))-). ( -21.60)
>DroPer_CAF1 255856 87 - 1
UCCA--UAUUUUUGGUUUAUUUUU-AAACCAUUUUUUAUCAUCAGCUGUCAAUAGUU-CGGGCAGCUGA-CCC-GCCA---AAAGGAGCAGCCAGA-------------
(((.--......(((((((....)-))))))..........(((((((((.......-..)))))))))-...-....---...))).........------------- ( -23.30)
>consensus
UCCA__CACUUUUGGUUUAUUUUUCAAACAAUUUUUUAUCAUCAGCUGUCAAUAGUU_CAGGCAGCUG__CCC_ACCA___AAAGAAGCAGCCAGA_____AAAU__G_
.(((........)))...........................((((((((..........))))))))......................................... (-10.76 = -10.65 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:22 2006