Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,025,067 – 16,025,157 |
Length | 90 |
Max. P | 0.824665 |
Location | 16,025,067 – 16,025,157 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 77.95 |
Mean single sequence MFE | -16.08 |
Consensus MFE | -11.04 |
Energy contribution | -12.10 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.22 |
Mean z-score | -1.49 |
Structure conservation index | 0.69 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824665 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16025067 90 + 22407834 -----AGUUGUUGCUCUGCUCACACACCAUACUCU--------GCCUGGUCAAAGUUGCAAUAGCAAAACAUAAAACAUUUUUUAUGUAAUGGUUUUUAUUUU -----.((((((((...(((.....((((......--------...))))...))).))))))))...((((((((....))))))))............... ( -17.70) >DroSim_CAF1 205037 90 + 1 -----AGUUGCUGCUCUGCUCACACCCCAUACUCC--------GCCUGGUCAAAGUUUCAAUAGCAAAACAUAAAACAUUUUUUAUGUAAUGGUUUUUAUUUU -----..((((((....(((...(((.........--------....)))...))).....)))))).((((((((....))))))))............... ( -11.62) >DroEre_CAF1 189550 98 + 1 -----AGUUGUUGCUCUACUCAUACACCAUACUCCAUACACCAUCCUGGUCAAAGUUGCAAUAGCAAAACAUAAAACAUUUUUUAUGUAAUGGUUUUUAUUAU -----.((((((((...(((.....((((.................))))...))).))))))))...((((((((....))))))))............... ( -16.73) >DroWil_CAF1 193290 89 + 1 UUUGC-CUUAUUGCAUUGCUCAUACGCCGU-------------CCCUGGUCAAAGUUGCAAUAGCAAAACAUAAAACAUUUUUUAUGUAAUGAUUUUUCCUCC (((((-..(((((((..(((.....((((.-------------...))))...)))))))))))))))((((((((....))))))))............... ( -17.70) >DroYak_CAF1 186723 98 + 1 -----AUUUGUUGCCCUGCUCAUACACCAUACGCCAUGCACCCCCCUGGUCAAAGUUGCAACAGCAAAACAUAAAACAUUUUUUAUGUAAUGGUUUUUAUUAU -----..(((((((...(((.....((((.................))))...))).)))))))((..((((((((....))))))))..))........... ( -14.33) >DroAna_CAF1 134662 87 + 1 UUCGUAGUUGUUGCAUCGCUCAUAC-------GCC--------GCCUGGUCAAAGUUGCAAUAGCAAAACAUAAAACAUU-UUUAUGUAAUGAUUUCUCUGCC .((((.(((((((((..(((.....-------(((--------....)))...))))))))))))...(((((((.....-))))))).)))).......... ( -18.40) >consensus _____AGUUGUUGCUCUGCUCAUACACCAUACUCC________GCCUGGUCAAAGUUGCAAUAGCAAAACAUAAAACAUUUUUUAUGUAAUGGUUUUUAUUAU ......((((((((...(((.....((((.................))))...))).))))))))...((((((((....))))))))............... (-11.04 = -12.10 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:21 2006