Locus 565

Sequence ID	2L_DroMel_CAF1
Location	1,759,111 – 1,759,206
Length	95
Max. P	0.996091

overview

Window 5

Location	1,759,111 – 1,759,206
Length	95
Sequences	5
Columns	95
Reading direction	forward
Mean pairwise identity	91.68
Mean single sequence MFE	-25.96
Consensus MFE	-21.50
Energy contribution	-22.14
Covariance contribution	0.64
Combinations/Pair	1.04
Mean z-score	-2.55
Structure conservation index	0.83
SVM decision value	2.65
SVM RNA-class probability	0.996091
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1759111 95 + 22407834
AUCAAGGGCCUGCUGAGAGGCUUCGAUUAACCAGGGCUACCAGCUCAUUCGUGCAAAAUGCAUGUCCAUCAAUCCAAAACAAAUUAGCACUGCCC
.....((((.((((((..(..((.((((.....((((.....))))...(((((.....)))))......)))).))..)...))))))..)))) ( -25.50)
>DroSec_CAF1 16184 95 + 1
AUCCAUGGCCUGCUGAGAGAUUUCGAUUAACCAGGGCUCCCAGCUCAUUCAUGCAAAAUGCAUGGCGAUCAAUCCAAAACAAAUUAGCACUGCCC
......(((.((((((..(.(((.((((.....((((.....))))..((((((.....)))))).....)))).))).)...))))))..))). ( -24.00)
>DroSim_CAF1 22837 95 + 1
AUCCAGGGCCUGCUGAGAGAUUUCGAUUAACCAGGGCUCCCAACUCAUUCAUGCAAAAUGCAUGGCGAUCAAUCCAAAACAAAUUAGCACUGCCC
.....((((.((((((..(.(((.((((.....((....)).......((((((.....)))))).....)))).))).)...))))))..)))) ( -24.20)
>DroEre_CAF1 16006 95 + 1
AUUCAGGGCCUGCUGAGAGGUUUAGAUUAAUCGGGUUUCCCAGCUCAUUCAUGCAAAAUGCAUGUCCAUCAAUCCAAAACAAAUUAGCACUGCCC
.....((((.((((((...((((.((((....((((......))))...(((((.....)))))......))))..))))...))))))..)))) ( -26.90)
>DroYak_CAF1 23408 95 + 1
AUUCAGGGCCUGCUGAGAGGUUUAGAUUAAUCGGGCUUCCCAGCUCAUUCAUGCAAAAUGCAUGUCCAUCAAUCCAAAACAAAUUAGCACUGCCC
.....((((.((((((...((((.((((....(((((....)))))...(((((.....)))))......))))..))))...))))))..)))) ( -29.20)
>consensus
AUCCAGGGCCUGCUGAGAGGUUUCGAUUAACCAGGGCUCCCAGCUCAUUCAUGCAAAAUGCAUGUCCAUCAAUCCAAAACAAAUUAGCACUGCCC
.....((((.((((((...((((.((((.....((....))........(((((.....)))))......))))..))))...))))))..)))) (-21.50 = -22.14 +   0.64)

alignment

secondary structure

dotplot

Window 6

Location	1,759,111 – 1,759,206
Length	95
Sequences	5
Columns	95
Reading direction	reverse
Mean pairwise identity	91.68
Mean single sequence MFE	-30.28
Consensus MFE	-25.78
Energy contribution	-25.54
Covariance contribution	-0.24
Combinations/Pair	1.11
Mean z-score	-1.87
Structure conservation index	0.85
SVM decision value	1.70
SVM RNA-class probability	0.972713
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1759111 95 - 22407834
GGGCAGUGCUAAUUUGUUUUGGAUUGAUGGACAUGCAUUUUGCACGAAUGAGCUGGUAGCCCUGGUUAAUCGAAGCCUCUCAGCAGGCCCUUGAU
((((.((((.((..(((..((..(....)..)).)))..))))))......(((((..((..(((....)))..))..).))))..))))..... ( -25.20)
>DroSec_CAF1 16184 95 - 1
GGGCAGUGCUAAUUUGUUUUGGAUUGAUCGCCAUGCAUUUUGCAUGAAUGAGCUGGGAGCCCUGGUUAAUCGAAAUCUCUCAGCAGGCCAUGGAU
.(((..((((.....(.(((.((((((((..(((((.....)))))........((....)).)))))))).))).)....)))).)))...... ( -28.10)
>DroSim_CAF1 22837 95 - 1
GGGCAGUGCUAAUUUGUUUUGGAUUGAUCGCCAUGCAUUUUGCAUGAAUGAGUUGGGAGCCCUGGUUAAUCGAAAUCUCUCAGCAGGCCCUGGAU
((((..((((.....(.(((.((((((((..(((((.....)))))........((....)).)))))))).))).)....)))).))))..... ( -30.90)
>DroEre_CAF1 16006 95 - 1
GGGCAGUGCUAAUUUGUUUUGGAUUGAUGGACAUGCAUUUUGCAUGAAUGAGCUGGGAAACCCGAUUAAUCUAAACCUCUCAGCAGGCCCUGAAU
((((..((((.....(.(((((((((((.(.(((((.....)))))........((....))).))))))))))).)....)))).))))..... ( -34.10)
>DroYak_CAF1 23408 95 - 1
GGGCAGUGCUAAUUUGUUUUGGAUUGAUGGACAUGCAUUUUGCAUGAAUGAGCUGGGAAGCCCGAUUAAUCUAAACCUCUCAGCAGGCCCUGAAU
((((..((((.....(.(((((((((((((.(((((.....))))).....(((....))))).))))))))))).)....)))).))))..... ( -33.10)
>consensus
GGGCAGUGCUAAUUUGUUUUGGAUUGAUGGACAUGCAUUUUGCAUGAAUGAGCUGGGAGCCCUGGUUAAUCGAAACCUCUCAGCAGGCCCUGGAU
((((..((((.....(.(((.(((((((.(.(((((.....)))))........((....))).))))))).))).)....)))).))))..... (-25.78 = -25.54 +  -0.24)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:52 2006