Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,023,644 – 16,023,747 |
Length | 103 |
Max. P | 0.711573 |
Location | 16,023,644 – 16,023,747 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 81.57 |
Mean single sequence MFE | -11.32 |
Consensus MFE | -7.03 |
Energy contribution | -7.03 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.08 |
Structure conservation index | 0.62 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.711573 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16023644 103 + 22407834 ----ACAAUGCAU-ACCAAAAAAAAUAAAAACAUGACAAAGAACAAGUGUCAUGCUAAAAAUUGCACAGAUUUUCAUUUAACAUAAUUCCCGAAACACAAAAAAAAAA ----....((((.-.................(((((((.........)))))))........)))).......................................... ( -7.27) >DroPse_CAF1 224485 87 + 1 ----CCAAUGCAU-AAAGGAA-------AAACAUGACAACGAACAAGUGUCAUGAGAAAAAUUGCACAGAUUUUCAUUUAACAUAAUUCC--------AAAAA-AAAA ----.........-...((((-------...(((((((.(......)))))))).(((((.((....)).)))))...........))))--------.....-.... ( -14.80) >DroEre_CAF1 188144 91 + 1 ----ACAAUGCAU-ACCGAAA-------AAACAUGACAAAGAACAAGUGUCAUGCUAA-AAUUGCACAGAUUUUCAUUUAACAUAAUUCCCGAAACACAAA----AAA ----....((((.-.......-------...(((((((.........)))))))....-...))))...................................----... ( -8.67) >DroYak_CAF1 185302 94 + 1 ----ACAAUGCAU-GCCGAAA-------AAACAUGACAAAGAACAAGUGUCAUGCUAA-AAUUGCACAGAUUUUCAUUUAACAUAAUUCCCGAAACACAAAAA-AAAA ----........(-((.....-------...(((((((.........)))))))....-....))).....................................-.... ( -8.69) >DroAna_CAF1 132496 97 + 1 AUUGCCAUGGCACAGCCCAAA-------AAACAUGACAACAAACAAGUGUCAUGCGAAAAAUUGCACAGAUUUUCAUUUAACAUAAUUCCAGCAACAAAAA----AAU ..(((....)))..((.....-------...(((((((.(......)))))))).(((((.((....)).)))))................))........----... ( -13.70) >DroPer_CAF1 253992 86 + 1 ----CCAAUGCAU-AAAGGAA-------AAACAUGACAACGAACAAGUGUCAUGAGAAAAAUUGCACAGAUUUUCAUUUAACAUAAUUCC--------AAAA--AAAA ----.........-...((((-------...(((((((.(......)))))))).(((((.((....)).)))))...........))))--------....--.... ( -14.80) >consensus ____ACAAUGCAU_ACCGAAA_______AAACAUGACAAAGAACAAGUGUCAUGCGAAAAAUUGCACAGAUUUUCAUUUAACAUAAUUCCCGAAACACAAAA__AAAA ...............................(((((((.........)))))))...................................................... ( -7.03 = -7.03 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:20 2006