Locus 5648

Sequence ID 2L_DroMel_CAF1
Location 16,022,188 – 16,022,286
Length 98
Max. P 0.540641
window8956

overview

Window 6

Location 16,022,188 – 16,022,286
Length 98
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.40
Mean single sequence MFE -30.05
Consensus MFE -20.21
Energy contribution -20.27
Covariance contribution 0.06
Combinations/Pair 1.18
Mean z-score -1.21
Structure conservation index 0.67
SVM decision value 0.01
SVM RNA-class probability 0.540641
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16022188 98 + 22407834
AGUUGCAACUGGCCAUGCAAGAUUGCUGGCG---AA---------------AAACAAAAG----GUAUAUUUGUAUCUAUGCAUUUUGUAUGCGGGUUUUCAGCAACUGUUGUCCACCAG
((((((.....((((.(((....)))))))(---((---------------((.(...((----((((....)))))).(((((.....)))))).))))).))))))............ ( -27.20)
>DroPse_CAF1 222817 115 + 1
AAUUGCAGCUGGCCAUGCAAGAUUUCUGGUAACGGAAACCGAGCGGGGAA-AGGCAAAAA----GUAUAUUUGUAUCUAUGCAUUUUGCAUGCGGGCUUUCAGCAACUGUUGUCUGUCAG
...((((.((..((.(((..(.((((((....)))))).)..))).))..-))((((((.----(((((........))))).)))))).))))(((...((((....))))...))).. ( -33.30)
>DroEre_CAF1 186843 98 + 1
AGUUGCAGCUGGACAUGCAAGAUUGCUGGCG---AA---------------AAGCAAAAA----GUACAUUUGUAUCUAUGCAUUUUGUAUGCGGGUUUUCAGCAACUGUUGUCCACCAG
((((((((((.(.((((((((((.((..((.---..---------------..)).....----((((....))))....))))))))))))).))))....))))))............ ( -26.30)
>DroYak_CAF1 182872 98 + 1
AGUUGCAGUUGGUCAUGCAAGAUAGCUGACG---GA---------------AAAUAAAAG----GUAUAUUUGUAUCUAUGCAUUUUGUAUGCGGGCUUUCAGCAACUGUUGUCCACCAG
((((((((((.(.((((((((((.((.((..---..---------------(((((....----...)))))...))...))))))))))))).))))....))))))............ ( -23.60)
>DroAna_CAF1 131391 120 + 1
AGUUGCAGCUGGGCAGGCAAGAUUGCUGGUGUCGAAAACUGCGAAGGGAAUAAACAAAAAGUCCGUAUAUUUGUAUCUAUGCAUUUUGCAUGCGGGCUUUCAGCAACUGUUGUCGCUCAG
........((((((.(((((.(((((((...(((.......))).............(((((((((((...((((....))))......))))))))))))))))).).))))))))))) ( -36.60)
>DroPer_CAF1 252303 115 + 1
AAUUGCAGCUGGCCAUGCAAGAUUUCUGGUAACGGAAACCGAGCGGGGAA-AGGCAAAAA----GUAUAUUUGUAUCUAUGCAUUUUGCAUGCGGGCUUUCAGCAACUGUUGUCUGUCAG
...((((.((..((.(((..(.((((((....)))))).)..))).))..-))((((((.----(((((........))))).)))))).))))(((...((((....))))...))).. ( -33.30)
>consensus
AGUUGCAGCUGGCCAUGCAAGAUUGCUGGCG___AA_______________AAACAAAAA____GUAUAUUUGUAUCUAUGCAUUUUGCAUGCGGGCUUUCAGCAACUGUUGUCCACCAG
((((((((((.(.((((((((((...............((....))..................(((((........)))))))))))))))).))))....))))))............ (-20.21 = -20.27 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:19 2006