Locus 5644

Sequence ID 2L_DroMel_CAF1
Location 16,013,934 – 16,014,045
Length 111
Max. P 0.774137
window8951

overview

Window 1

Location 16,013,934 – 16,014,045
Length 111
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 82.88
Mean single sequence MFE -21.25
Consensus MFE -11.44
Energy contribution -12.75
Covariance contribution 1.31
Combinations/Pair 1.17
Mean z-score -2.74
Structure conservation index 0.54
SVM decision value 0.54
SVM RNA-class probability 0.774137
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16013934 111 + 22407834
AGAAAUGCAUUGCAUACAAGAAGGCCGUGGAAGUAUGGGCCUUGCCAAAAAGAGUGAUUGGAAAGAGCAGAAUGAACUGGGAAUGCCAAAAAAGAAAAAAAUCUUUAAAAA
......(((((.(.......((((((...........)))))).((((.........))))......(((......)))).)))))....(((((......)))))..... ( -19.20)
>DroSec_CAF1 189631 109 + 1
AGAAAUGCAUUGCAUACAAGCAGGCCUUGGAAGUAAGGGCUUUGCCAAAAAGAGUGAUUGGAAAGAGCUGAAUGAACUGGAAAUGCCAAAAAAGAAAA--ACUCUUAAAAA
....((((...))))....(((((((((.......))))).))))....((((((..(..(......)..)......(((.....)))..........--))))))..... ( -19.30)
>DroSim_CAF1 193421 101 + 1
AGAAAGGCAUUGC--------AGGCCUUGGAAGUAAGGGCUUUGCCAAAAAGAGUGAUUGGAAAGAGCUGAAUGAACUGGAAAUGCCAAAAAAGAAAA--ACUCUUAAAAA
.....((((((.(--------((.(((((....)))))(((((.((((.........))))..)))))........)))..))))))....((((...--..))))..... ( -23.10)
>DroYak_CAF1 174687 105 + 1
A-AAAUGCAUUCCAUACAAGAAGGCCUUGGAAAUAAAGGCUUUGCCAAAAAGAGUGAUUGGAAAAGGCGGAAUGAAAUGAAAAUGGG---AAACGAAA--AAGCUAAAAAA
.-.....((((((.......((((((((.......))))))))(((.....((....))......)))))))))...........(.---...)....--........... ( -23.40)
>consensus
AGAAAUGCAUUGCAUACAAGAAGGCCUUGGAAGUAAGGGCUUUGCCAAAAAGAGUGAUUGGAAAGAGCUGAAUGAACUGGAAAUGCCAAAAAAGAAAA__ACUCUUAAAAA
.....((((((.........((((((((.......)))))))).((((.........))))....................))))))........................ (-11.44 = -12.75 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:14 2006