Locus 5641

Sequence ID	2L_DroMel_CAF1
Location	15,999,967 – 16,000,057
Length	90
Max. P	0.518157

overview

Window 8

Location	15,999,967 – 16,000,057
Length	90
Sequences	5
Columns	90
Reading direction	reverse
Mean pairwise identity	84.13
Mean single sequence MFE	-18.59
Consensus MFE	-11.10
Energy contribution	-13.10
Covariance contribution	2.00
Combinations/Pair	1.00
Mean z-score	-1.97
Structure conservation index	0.60
SVM decision value	-0.03
SVM RNA-class probability	0.518157
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15999967 90 - 22407834
CCACUCCGGUCCAUGAUACUUCAAUCCAACUCCUAUUCAUCCAGGCGGAGACAAUCAAUUACAAUAUCUCCCGACGGACCAGAGGCCAUG
...(((.(((((.(((....)))........(((........))).(((((...............)))))....))))).)))...... ( -19.76)
>DroSec_CAF1 175714 90 - 1
CCACUCCGGUCCAUGAUACUUCAAUCCACCUCCCAUUCAUCCAGGCGGAGACAAUCAAUUACAAUAUCUCCCGACGGACCAGAGGCCAUG
...(((.(((((.(((....))).(((.(((...........))).)))..........................))))).)))...... ( -20.70)
>DroSim_CAF1 179425 90 - 1
CCACUCCGGUCCAUGAUACUUCAAUCCACCUCCCAUUCAUCCAGGCGGAGACAAUCAAUUACAAUAUCUCCCGACGGACCAGAGGCCAUG
...(((.(((((.(((....))).(((.(((...........))).)))..........................))))).)))...... ( -20.70)
>DroEre_CAF1 161882 82 - 1
CCG---GAGCCCACGACACUUCAAUCCACCUCCCAUUCAGCCAGGCGGAGGCAAUCAAUUACAAUAUGUCCCGACGGACCAGCGG-----
(((---..(((...((....))..(((.(((..(.....)..))).))))))...............((((....))))...)))----- ( -16.70)
>DroYak_CAF1 160427 81 - 1
CCGCUCAGGUCCACGAUACUUCAAUCCUCCUUCUAUUCAUUGAGGCAGAGACAAUCAAUUACAAUACCUCCCAACGGACCA---------
.......(((((..((....))..((((.((((........)))).)).))........................))))).--------- ( -15.10)
>consensus
CCACUCCGGUCCAUGAUACUUCAAUCCACCUCCCAUUCAUCCAGGCGGAGACAAUCAAUUACAAUAUCUCCCGACGGACCAGAGGCCAUG
...(((.(((((..((....))..(((.(((...........))).)))..........................))))).)))...... (-11.10 = -13.10 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:11 2006