Locus 5640

Sequence ID 2L_DroMel_CAF1
Location 15,999,408 – 15,999,500
Length 92
Max. P 0.854110
window8947

overview

Window 7

Location 15,999,408 – 15,999,500
Length 92
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 86.38
Mean single sequence MFE -30.30
Consensus MFE -24.59
Energy contribution -25.40
Covariance contribution 0.81
Combinations/Pair 1.13
Mean z-score -2.55
Structure conservation index 0.81
SVM decision value 0.80
SVM RNA-class probability 0.854110
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15999408 92 - 22407834
CAAAAAAGGUGCUAAAUAGGCGCCUGGAGCUGUGAGCUGACU------GUCCAUCACUGCCCCGGAGUAUUUAGCAUUUUUUUUAGCGGCAAGUACUU
.((((((((((((((((..((..((((.((.((((((.....------))...)))).)).)))).)))))))))))))))))).............. ( -28.30)
>DroSec_CAF1 175149 92 - 1
CAAAAAAGGUGCUAAAUAGGCGCCUGGAGCUGUGAGCUGACU------GUCCAUCACUGCCCCGGAGUAUUUAGCAUUUUUUUUAGCGGCAAGUACUU
.((((((((((((((((..((..((((.((.((((((.....------))...)))).)).)))).)))))))))))))))))).............. ( -28.30)
>DroSim_CAF1 178860 92 - 1
CAAAAAAGGUGCUAAAUAGGCGCCUGGAGCUGUGAGCUGACU------GUCCAUCACUGCCCCGGAGUAUUUAGCAUUUUUUUUAGCGGCAAGUACUU
.((((((((((((((((..((..((((.((.((((((.....------))...)))).)).)))).)))))))))))))))))).............. ( -28.30)
>DroEre_CAF1 161399 92 - 1
CAAAAAAGGUGCUAAAUAGGCGCCUGGAGCUUUGAGCUGACU------GUACAUCACUGCCCCGGAGUAUUUAGCAUUUUUUUUAGCGGCAAGUACAU
.((((((((((((((((..((..((((.((..(((((.....------))...)))..)).)))).)))))))))))))))))).............. ( -25.60)
>DroYak_CAF1 159925 92 - 1
CAAAAAAGGUGCUAAAUAGGCGCCAGGAGCUGUGUGCUGACU------AUCCAUCACUGCCCCGGAGUAUUUAGCAUUUUUUUUAGCGGCAACUACUU
.((((((((((((((((..((.((.((.((...(((.((...------...)).))).)))).)).))))))))))))))))))...(....)..... ( -28.10)
>DroAna_CAF1 110713 95 - 1
CAAAAAACGAGCUAAAUAGAACGCUGG-GCUUUGAGAGAGCCCAAGGAUUCUUUCAUUGU-CCGGCGUAUUUAGCACGUUUUUU-GCGGCAAGCGUUU
(((((((((.(((((((...(((((((-((..((((((((((...)).))))))))..))-)))))))))))))).))))))))-)............ ( -43.20)
>consensus
CAAAAAAGGUGCUAAAUAGGCGCCUGGAGCUGUGAGCUGACU______GUCCAUCACUGCCCCGGAGUAUUUAGCAUUUUUUUUAGCGGCAAGUACUU
.(((((((((((((((((.....((((.((.((((...(((.......)))..)))).)).))))..))))))))))))))))).............. (-24.59 = -25.40 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:11 2006