| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,757,927 – 1,758,019 |
| Length | 92 |
| Max. P | 0.780627 |
| Location | 1,757,927 – 1,758,019 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 78.05 |
| Mean single sequence MFE | -25.67 |
| Consensus MFE | -11.47 |
| Energy contribution | -12.38 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.780627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1757927 92 + 22407834 UCAUGUCAUUUUC-CUCC---------------GCUCUCGACGUCUGCAGGACAUAAAUCAAUGCAUCCUGACACAAACUGGACGUCCUGACUUUCGAC-----UGCGGAAAC .............-.(((---------------((..((((.(((((((((((((......)))..))))).))......((....)).)))..)))).-----.)))))... ( -24.10) >DroSec_CAF1 15020 92 + 1 UCAUGUCAUUUUG-CUCC---------------GCUCUCGACGUCCGCAGGACAUAAAUCAAUGCAUCCUGACACAAACUGGACGUCCUGACUUUCGAC-----UGCGGAAAC .............-.(((---------------((..((((((((((((((((((......)))..)))))........))))))))..(.....))).-----.)))))... ( -26.10) >DroSim_CAF1 21676 92 + 1 UCAUGUCAUUUUG-CUCC---------------GCUCUCGACGUCCGCAGGACAUAAAUCAAUGCAUCCUGACACAAACUGGACGUCCUGACUUUCGAC-----UGCGGAAAC .............-.(((---------------((..((((((((((((((((((......)))..)))))........))))))))..(.....))).-----.)))))... ( -26.10) >DroEre_CAF1 14677 92 + 1 ACAUGUAAUUUUU-CCCC---------------CCUCACGUCGUCCGCAGGACAUAAAUCAAUGCGUCCUGCCACAAGCUGGACAUCCUGCCUUUCGAC-----UGUGGAAGC .............-....---------------((.((.((((...(((((((((......))).((((.((.....)).)))).))))))....))))-----)).)).... ( -26.90) >DroYak_CAF1 22118 93 + 1 UCAUGUCAUUUCCACCCC---------------CCUCACGACGUCCGCAGGACAUAAAUCAAUGCAUCCUGACACAAGCUGGACGUCCUGACUUUCGAC-----UGUGGACAC ..........(((((...---------------..(((.((((((((((((((((......)))..)))))........)))))))).)))........-----.)))))... ( -24.04) >DroAna_CAF1 14265 109 + 1 UCAUGUU--UUUG-CUCUGUCCAGCUCCUCCCUCUUUUUGACUUCUGCUGGACAUAAAUCAAUGCAUCCUGACACG-GCUCAGCAUCCUGGCAUGCAGCUAGAGUCCAGAUAC ...((((--(..(-(((((((((((.......((.....)).....))))))).........(((((((.((..(.-.....)..))..)).)))))...)))))..))))). ( -26.80) >consensus UCAUGUCAUUUUG_CUCC_______________CCUCUCGACGUCCGCAGGACAUAAAUCAAUGCAUCCUGACACAAACUGGACGUCCUGACUUUCGAC_____UGCGGAAAC .......................................((((((((((((((((......)))..)))))........)))))))).......................... (-11.47 = -12.38 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:50 2006