Locus 5638

Sequence ID 2L_DroMel_CAF1
Location 15,988,663 – 15,988,772
Length 109
Max. P 0.989881
window8943 window8944

overview

Window 3

Location 15,988,663 – 15,988,772
Length 109
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 79.55
Mean single sequence MFE -29.93
Consensus MFE -20.40
Energy contribution -19.73
Covariance contribution -0.66
Combinations/Pair 1.11
Mean z-score -2.37
Structure conservation index 0.68
SVM decision value 1.70
SVM RNA-class probability 0.972830
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15988663 109 + 22407834
UUUACGAACACAUGCAACAGAGUGCUUCAAUGUGUUUGUAUUUGGUUGUGUUUUUUUAUAUGGUUGCUGACAUAUGGGUACAGUAUGUACCCGAUAUGGGCGCCUACCA
..((((((((((((((......)))....)))))))))))..((((.((((......))))(((.(((..(((((((((((.....)))))).))))))))))).)))) ( -34.70)
>DroSec_CAF1 164360 95 + 1
UUUACUAACCC----------GCGCUACAAUUUGUUUGUAUUUGGCUGU----UUUAAUAUGGCUGGUGACAUAUGGGUACAGUGGGUACCCGUUUUGUGCGCCUACCA
...........----------((((.((((......(((..(..(((((----......)))))..)..))).((((((((.....)))))))).))))))))...... ( -27.90)
>DroSim_CAF1 168043 91 + 1
UUUACUAACCC----------GCGCUACAAUUUGUUUGUAUUUGGCUGU----UUUAAUAUG----GUGACAUAUGGGUACAGUGGGUACCCGUUGUGUGCGCCUACCA
...........----------((((((((((..................----....(((((----....)))))((((((.....)))))))))))).))))...... ( -27.20)
>consensus
UUUACUAACCC__________GCGCUACAAUUUGUUUGUAUUUGGCUGU____UUUAAUAUGG_UGGUGACAUAUGGGUACAGUGGGUACCCGUUAUGUGCGCCUACCA
.....................((((.(((............................(((((........)))))((((((.....))))))....)))))))...... (-20.40 = -19.73 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 4

Location 15,988,663 – 15,988,772
Length 109
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 79.55
Mean single sequence MFE -25.93
Consensus MFE -15.55
Energy contribution -15.67
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -3.14
Structure conservation index 0.60
SVM decision value 2.19
SVM RNA-class probability 0.989881
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15988663 109 - 22407834
UGGUAGGCGCCCAUAUCGGGUACAUACUGUACCCAUAUGUCAGCAACCAUAUAAAAAAACACAACCAAAUACAAACACAUUGAAGCACUCUGUUGCAUGUGUUCGUAAA
((((..((...(((((.((((((.....)))))))))))...)).))))....................(((.(((((((...(((.....)))..))))))).))).. ( -30.50)
>DroSec_CAF1 164360 95 - 1
UGGUAGGCGCACAAAACGGGUACCCACUGUACCCAUAUGUCACCAGCCAUAUUAAA----ACAGCCAAAUACAAACAAAUUGUAGCGC----------GGGUUAGUAAA
((((.((.(.(((....((((((.....))))))...)))).)).))))((((((.----.(.((....(((((.....)))))..))----------)..)))))).. ( -25.40)
>DroSim_CAF1 168043 91 - 1
UGGUAGGCGCACACAACGGGUACCCACUGUACCCAUAUGUCAC----CAUAUUAAA----ACAGCCAAAUACAAACAAAUUGUAGCGC----------GGGUUAGUAAA
((((.((((....)...((((((.....))))))....)))))----))((((((.----.(.((....(((((.....)))))..))----------)..)))))).. ( -21.90)
>consensus
UGGUAGGCGCACAAAACGGGUACCCACUGUACCCAUAUGUCACCA_CCAUAUUAAA____ACAGCCAAAUACAAACAAAUUGUAGCGC__________GGGUUAGUAAA
((((.(...........((((((.....))))))(((((........))))).........).))))..(((((.....)))))......................... (-15.55 = -15.67 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:08 2006