Locus 5637

Sequence ID 2L_DroMel_CAF1
Location 15,987,694 – 15,987,784
Length 90
Max. P 0.780802
window8942

overview

Window 2

Location 15,987,694 – 15,987,784
Length 90
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 81.80
Mean single sequence MFE -20.45
Consensus MFE -12.20
Energy contribution -13.03
Covariance contribution 0.83
Combinations/Pair 1.19
Mean z-score -2.50
Structure conservation index 0.60
SVM decision value 0.56
SVM RNA-class probability 0.780802
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15987694 90 + 22407834
AAUUAGUUUGCAUAAUUAUGUGUGCUCCCUGGUCCUUGUGCUUCCCACAUAGGCACGC--AAACGC------------------ACACGCACACGCACACAUAUCAACCU
................(((((((((....(((((((((((.....)))).))).)).)--)...((------------------....))....)))))))))....... ( -21.80)
>DroSec_CAF1 163177 84 + 1
AAUUAGUUUGCAUAAUUAUGUGUGCUCCCUGGUCCUUGUGCUUCCCACAUAGGCACGC--AAACGC------------------ACA------CGCACACAUAUCAACCU
................(((((((((......(((((((((.....)))).))).))((--....))------------------...------.)))))))))....... ( -21.50)
>DroSim_CAF1 166853 84 + 1
AAUUAGUUUGCAUAAUUAUGUGUGCUCCCUGGUCCUUGUGCUUCCCACAUAGGCACGC--AAAGGC------------------ACA------CGCACACAUAUCAACCU
................(((((((((....((..((((((((((.......))))))..--.)))).------------------.))------.)))))))))....... ( -21.70)
>DroEre_CAF1 150043 102 + 1
AAUUAGUUUGCAUAAUUAUGUGUGCUCCCUGGUCCUUGUGCUCCCCACAUAGGCACAC--AAACGCACACUCACACGCACACGCACA------CGCACACAUAUCAACCU
.....((.(((........((((((......(((((((((.....)))).))).))..--....))))))......((....))...------.))).)).......... ( -23.00)
>DroYak_CAF1 148409 84 + 1
AAUUAGUUUGCAUAAUUAUGUGUGCUCCCUGGUCCUUGUGCUCCCCACAUAGGCGCAC--AAGCGC------------------ACA------CGCACUCAUAUCAACCU
................((((.((((....((((.(((((((.((.......)).))))--))).))------------------.))------.)))).))))....... ( -23.00)
>DroAna_CAF1 101030 79 + 1
AAUUAGUUUGCAUAAUUAUGUUCGCUCCCUGGCCCAUGUUCU-CGCACACAAGCAGGCUAAAAUAC------------------ACA------CGCACAC------ACCU
..(((((((((............(((....)))...(((...-.))).....))))))))).....------------------...------.......------.... ( -11.70)
>consensus
AAUUAGUUUGCAUAAUUAUGUGUGCUCCCUGGUCCUUGUGCUUCCCACAUAGGCACGC__AAACGC__________________ACA______CGCACACAUAUCAACCU
................(((((((((.(....)....((((((.........)))))).....................................)))))))))....... (-12.20 = -13.03 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:06 2006