Locus 5635

Sequence ID 2L_DroMel_CAF1
Location 15,975,128 – 15,975,220
Length 92
Max. P 0.723748
window8940

overview

Window 0

Location 15,975,128 – 15,975,220
Length 92
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 88.83
Mean single sequence MFE -28.56
Consensus MFE -22.40
Energy contribution -22.08
Covariance contribution -0.32
Combinations/Pair 1.09
Mean z-score -1.65
Structure conservation index 0.78
SVM decision value 0.41
SVM RNA-class probability 0.723748
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15975128 92 - 22407834
ACUCCCCAAUCGCUGU--------AUGUUGGCUUGUCUGGCCUGGCGCACAAUGAUUACUUCAUUGGCCGGGUCCUUUGUCCCGGUCGAAAUUGGAGUCU
(((((..(((((.(((--------.((((((((.....)))).)))).))).)))))......(((((((((........)))))))))....))))).. ( -34.50)
>DroSec_CAF1 150555 87 - 1
ACUCCCCAAUCGCUGU--------AUGUUGGCUUGUCU-----GGCGCACAAUGAUUACUUCAUUGGCCGGGUCCUUUGUCCUGGUCGAAAUUGGAGUCU
(((((..(((((.(((--------.(((..(.....).-----.))).))).)))))......(((((((((........)))))))))....))))).. ( -28.60)
>DroSim_CAF1 152913 87 - 1
ACUCCCCAAUCGCUGU--------AUGUUGGCUUGUCU-----GGCGCACAAUGAUUACUUCAUUGGCCGGGUCCUUUGUCCUGGUCGAAAUUGGAGUCU
(((((..(((((.(((--------.(((..(.....).-----.))).))).)))))......(((((((((........)))))))))....))))).. ( -28.60)
>DroEre_CAF1 137490 95 - 1
GCUCCCCAAUCGCUGUAUGUCUGUAUGUUAGCUUGUCU-----GGCGCACAAUGAUUACUUCAUUGGCCGGGUUCUUUGUCCUGGUCGAAAUCGGAGACU
.((((..(((((.(((.((((.(.(((......)))).-----)))).))).)))))......(((((((((........)))))))))....))))... ( -26.50)
>DroYak_CAF1 135057 93 - 1
GUUCCCCAAUCGCUGUAC--UCGUAUGUUGACUUGUCU-----GGCGCACAAUGAUUACUUCAUUGGCCGGGUUCUUUGUCCUGGUCGAAAUUGGAGACU
..((.(((((((((..((--..((......))..))..-----))))..((((((.....))))))((((((........))))))....))))).)).. ( -24.60)
>consensus
ACUCCCCAAUCGCUGU________AUGUUGGCUUGUCU_____GGCGCACAAUGAUUACUUCAUUGGCCGGGUCCUUUGUCCUGGUCGAAAUUGGAGUCU
.((((....(((......................(((......)))...((((((.....))))))((((((........)))))))))....))))... (-22.40 = -22.08 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:04 2006