Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,974,400 – 15,974,509 |
Length | 109 |
Max. P | 0.781717 |
Location | 15,974,400 – 15,974,509 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 93.60 |
Mean single sequence MFE | -20.45 |
Consensus MFE | -18.83 |
Energy contribution | -18.82 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.08 |
Mean z-score | -1.60 |
Structure conservation index | 0.92 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781717 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15974400 109 + 22407834 UCCUCUGACAGCGUGCCACGCCCUCGCCACUGACAUGUUCCACUUGCCAAAUAUAGUUAUAUAUA--UAUAUAUAUAGCCUACUCAUUCGAGUACCUUUCAUCGCUGGUAU ......((..(((.....)))..))((((.(((......................(((((((((.--...))))))))).(((((....))))).......))).)))).. ( -21.00) >DroSec_CAF1 149841 105 + 1 UCCUCUGACAGCCGGCCACGCCCUCGCCACUGACAUGUUCUACUUGCCAAAUAUAGUUAUAUAU------AUAUAUAACCUACUCAUUCGAGUACCUUUCAUCGCUGGUAU ........(((..(((.........))).)))............(((((......(((((((..------..))))))).(((((....)))))...........))))). ( -18.10) >DroSim_CAF1 152189 105 + 1 UCCUCUGACAGCCGGCCACGCCCUCGCCACUGACAUGUUCCACUUGCCAAAUAUAGUUAUAUAU------AUAUAUAACCUACUCAUUCGAGUACCUUUCAUCGCUGGUAU ........(((..(((.........))).)))............(((((......(((((((..------..))))))).(((((....)))))...........))))). ( -18.10) >DroEre_CAF1 136763 111 + 1 UCCUCUGACAGCUGGCCACGCCCCCGCCACUGACAUGUUCCACUUGCCAAAUAUAGUUAUAUAUAGAUAUAUGUAUAACCUACUCAUUCGAGUACCUUUCAUCGCUGGUAU ........(((.((((.........)))))))............(((((......((((((((((....)))))))))).(((((....)))))...........))))). ( -24.60) >consensus UCCUCUGACAGCCGGCCACGCCCUCGCCACUGACAUGUUCCACUUGCCAAAUAUAGUUAUAUAU______AUAUAUAACCUACUCAUUCGAGUACCUUUCAUCGCUGGUAU ........((((.(((.........)))..(((......................((((((((((....)))))))))).(((((....)))))....)))..)))).... (-18.83 = -18.82 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:03 2006