Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,971,810 – 15,971,910 |
Length | 100 |
Max. P | 0.523309 |
Location | 15,971,810 – 15,971,910 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.62 |
Mean single sequence MFE | -21.47 |
Consensus MFE | -14.66 |
Energy contribution | -14.33 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.18 |
Mean z-score | -1.24 |
Structure conservation index | 0.68 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523309 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15971810 100 + 22407834 ACUUAUUACGACCAUAAUUAACACUAAAUUCCCCA-AAUGGCAACGGACAACUGUCAGCUGCAAAAUCAUUUGCGGUAAGGAGUCGUA-GCAAUGCUCGCAU------------------ ......((((((.....(((....)))..(((...-..((....))(((....))).((((((((....))))))))..)))))))))-((.......))..------------------ ( -20.50) >DroPse_CAF1 152182 118 + 1 ACUUAUUACGACCAUAAUUAACACUAAAUUCCCCA-AAUGGCAACGGACAACUGUCAACUGCAAAAUCAUUUGCGGUCAGGAGCCGAA-GCAGAGGCCGAAUGAAACAAAAUUCAUGUGA .....................(((........((.-....((..(((.(..(((...((((((((....)))))))))))..))))..-))...))..((((........))))..))). ( -23.20) >DroSec_CAF1 147155 101 + 1 ACUUAUUACGGCCAUAAUUAACACUAAAUUCCCCA-AAUGGCAACGGACAACUGUCAGCUGCAAAAUCAUUUGCGGUAAGGAGUCGUAGGCAAUGCUCGCAU------------------ ..........(((((....................-.)))))....(((..((....((((((((....)))))))).))..)))(..(((...)))..)..------------------ ( -21.20) >DroEre_CAF1 134228 100 + 1 ACUUAUUACGACCAUAAUUAACACUAAAUUCCCCA-AAUGGCAACGGACAACUGUCAGCUGCAAAAUCAUUUGCGGUAAGGAGUCGGA-GUAAUGUUCGCAU------------------ ...((((((..((......................-..((....))(((..((....((((((((....)))))))).))..))))).-)))))).......------------------ ( -20.70) >DroAna_CAF1 83216 89 + 1 ACAUAUUACGACCAUAAUUAAUACUAAAUUCCCUAAAAUGGCAACGGACAACUGUCAGCUGCAAAAUCAUUUGCGGCAAAGAAGC-----CAG--------U------------------ ......................................((((....(((....))).((((((((....))))))))......))-----)).--------.------------------ ( -20.00) >DroPer_CAF1 180897 118 + 1 ACUUAUUACGACCAUAAUUAACACUAAAUUCCCCA-AAUGGCAACGGACAACUGUCAACUGCAAAAUCAUUUGCGGUCAGGAGCCGAA-GCAGAGGCCGAAUGAAACAAAAUUCAUGUGA .....................(((........((.-....((..(((.(..(((...((((((((....)))))))))))..))))..-))...))..((((........))))..))). ( -23.20) >consensus ACUUAUUACGACCAUAAUUAACACUAAAUUCCCCA_AAUGGCAACGGACAACUGUCAGCUGCAAAAUCAUUUGCGGUAAGGAGUCGAA_GCAAUGCUCGCAU__________________ ............................((((......((....))(((....))).((((((((....))))))))..))))..................................... (-14.66 = -14.33 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:01 2006