Locus 5631

Sequence ID 2L_DroMel_CAF1
Location 15,969,607 – 15,969,719
Length 112
Max. P 0.859760
window8936

overview

Window 6

Location 15,969,607 – 15,969,719
Length 112
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 84.89
Mean single sequence MFE -34.68
Consensus MFE -28.14
Energy contribution -28.17
Covariance contribution 0.03
Combinations/Pair 1.19
Mean z-score -2.45
Structure conservation index 0.81
SVM decision value 0.82
SVM RNA-class probability 0.859760
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15969607 112 - 22407834
CACAUA--CAUGUACACACAUGGGCAUUCCUGCCAAUCGCUUUCCAUUUCGUGUUAAAUUACACAUUGAAUCGGAUUGCGGCGGCCAUAACAUUGUGGCCAAAAAAGGGAAGGG
......--(((((....)))))......(((.((..((((..(((..(((((((......))))...)))..)))..)))).(((((((....))))))).......)).))). ( -35.20)
>DroSec_CAF1 145002 105 - 1
CACAUA--------CACACAUGGGCAUUCCUGCCAAUCGCUUUCCAUUUCGUGUUAAAUUACACAUUGAAUCGGAUUGCGGCGGCCAUAACAUUGUGGCCAAA-AAGGAAAGGG
......--------............((((((((....((..(((..(((((((......))))...)))..)))..)))))(((((((....)))))))...-.))))).... ( -30.90)
>DroEre_CAF1 132286 113 - 1
CACACACUCAAAUGCACACACGGGCAUUCCUGCCAAUCGCUUUCCAUUUCGUGUUAAAUUACACAUUGAAUCGGAUUGCGGCGGCCAUAACUUUGUGGCCAAA-ACGGGAGGGG
..........(((((........)))))(((.((..((((..(((..(((((((......))))...)))..)))..)))).(((((((....)))))))...-..)).))).. ( -36.80)
>DroYak_CAF1 129402 113 - 1
CACAGAAGCACAUACACACAUGGGCAUUCCUGCCAAUCGCUUUCCAUUUCGUGUUAAAUUACACAUUGAAUCGGAUUGCGGCGGCCAUAACUUUGUGGCCAAA-AAGGGGAGGG
.......((.(((......))).))...(((.((..((((..(((..(((((((......))))...)))..)))..)))).(((((((....)))))))...-...)).))). ( -36.30)
>DroAna_CAF1 80955 104 - 1
C--------GUCCGCACACACGGACAUUCCUGCCAAUCGCUUUCCAUUUCGUGUUAAAUUACACAUUGAAUCGGAUUGCGGCGGCCAUAACAUAGUGGCCAAA--AGGGAAGGA
.--------(((((......)))))..((((.((..((((..(((..(((((((......))))...)))..)))..)))).((((((......))))))...--..)).)))) ( -39.30)
>DroPer_CAF1 177478 110 - 1
UACACGG--UCUCACGCACACAGACAGGCUCGUCAAUCGCUUUCCAUUUCGUGUUAAAUUACACAUUGAAUCGGAUUGCGGCGGCCAUAACAUUGUGGUUAAA-A-GGGAAGAA
.......--((((.(((.....(((......)))...(((..(((..(((((((......))))...)))..)))..))))))((((((....))))))....-.-)))).... ( -29.60)
>consensus
CACACA___ACAUACACACACGGGCAUUCCUGCCAAUCGCUUUCCAUUUCGUGUUAAAUUACACAUUGAAUCGGAUUGCGGCGGCCAUAACAUUGUGGCCAAA_AAGGGAAGGG
............................(((.((..((((..(((..(((((((......))))...)))..)))..)))).(((((((....))))))).......)).))). (-28.14 = -28.17 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:00 2006