| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,967,741 – 15,967,855 |
| Length | 114 |
| Max. P | 0.744381 |
| Location | 15,967,741 – 15,967,855 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 67.89 |
| Mean single sequence MFE | -26.27 |
| Consensus MFE | -15.73 |
| Energy contribution | -14.30 |
| Covariance contribution | -1.43 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.744381 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15967741 114 + 22407834 UACCCUUUCAUGGGUUCCUUUUGAGCAGAGCUCGAGUUCGAUCGAAAUGUGUC-ACAAUAGGAAGUUCGAGAUAAUUACUCAAGGAGCUGAAGGAAAUACGUAUGCGUAUAAUAA ...(((((....((((((((..((((...))))((((....(((((.(((...-...))).....))))).......)))))))))))))))))..(((((....)))))..... ( -29.90) >DroSim_CAF1 145505 95 + 1 UACCCUUUCAUGGGUUCCUUUUGAGCAGAGCUCGAGUUCGAUCGAAAUGUGUC-ACAAUAGGAAGCUCGAGAUCAUUACUCAAGGAGCC-------------------UUGAUAA .......(((.(((((((((..((((...))))((((..((((.....((.((-.......)).))....))))...))))))))))))-------------------))))... ( -27.90) >DroYak_CAF1 127590 91 + 1 UACGCUUUCGUGGGUUUCUAUUGAACAGAGCUGGGGUUCGAUCGAUACAUGUUCGAUACAUGAAGUUCGAGCUAAUUUCACAAGAAGUUAA------------------------ ...(((((.(((((......((((((.((((....))))........(((((.....)))))..))))))......)))))..)))))...------------------------ ( -21.00) >consensus UACCCUUUCAUGGGUUCCUUUUGAGCAGAGCUCGAGUUCGAUCGAAAUGUGUC_ACAAUAGGAAGUUCGAGAUAAUUACUCAAGGAGCU_A__________________U_AUAA ............((((((((((((((.((((....))))........(.(((.....))).)..))))))...........)))))))).......................... (-15.73 = -14.30 + -1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:59 2006