| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,965,169 – 15,965,283 |
| Length | 114 |
| Max. P | 0.730046 |
| Location | 15,965,169 – 15,965,283 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.70 |
| Mean single sequence MFE | -20.85 |
| Consensus MFE | -11.67 |
| Energy contribution | -12.62 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.730046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15965169 114 + 22407834 --UUCAUUUAAUUUCGCUCAA-AAGCGUCAAAAGUUAAGCUGUAAUCAUUUAAAUGAUUUAUGUUGCUUGAUUU---ACCAUAUCCCUUAGAUAUUUUGCUUGGCUUGACAUUUCCUCUU --.............(((...-.)))((((((((((((((...((((((....))))))......)))))))))---...(((((.....)))))..........))))).......... ( -19.90) >DroVir_CAF1 99717 100 + 1 --UUCAUUUAAUUUCGCUUAA-AAGCGCCAAAAGUUAAGCUGUAAUCAUUUAAAUGAUUUAUUUAACUUGAUUU---U-CAUAUCACG--GAUC------GCCGCUUGUCAUCUU----- --...................-(((((.(..((((((((....((((((....))))))..))))))))(((((---.-........)--))))------).)))))........----- ( -15.00) >DroGri_CAF1 115712 105 + 1 --UUCAUUUAAUUUCGCUUAA-AAGCGCCAAAAGUUAAGCUGUAAUCAUUUAAAUGAUUUAUUCAACUUGAUUU---U-CAUAUCACG--GAUC------GCCGCUUGUCAUUUUUUGCG --.............(((...-.)))((.(((((((((((.(..(((.......(((.....))).(.((((..---.-...)))).)--))).------.).)))))..)))))).)). ( -18.80) >DroWil_CAF1 101524 116 + 1 CCUUCAUUUAAUUUCGCUUAAAAAGCGUCAAAAGUUAAGCUGUAAUCAUUUAAAUGAUUUAUUUUGCUUGAUUUUUGUCCAUAUCCUUUAGAUCUUUCCCUC----UGACGCUUGGUCCU ......................((((((((((((((((((.((((((((....)))).))))...))))))))))).............(((........))----))))))))...... ( -23.70) >DroMoj_CAF1 101821 101 + 1 --UUCAUUUAAUUUAGCUUAA-AAGCGCCAAAAGUUAAGCUGUAAUCAUUUAAAUGAUUUAUUCAGCUUGAUUU---U-CAUAUCACG--GCUC------GCCGCUUGUCAGCUAG---- --...........(((((...-((((....((((((((((((.((((((....))))))....)))))))))))---)-........(--(...------.))))))...))))).---- ( -29.30) >DroAna_CAF1 76268 113 + 1 --UUCAUUUAAUUUCGCUUAA-AAGCGUCAAAAGUAAAGCUGUAAUAAUUUAAAUGAUUUAUUUAGCUUGAUUU---ACCAUGUC-CUUAGAUCUUUUGCUUGGCUUGACAUUUCCUCGU --.............(((...-.)))((((((((((((((((.(((((.((....)).)))))))))))(((((---(.......-..))))))...)))))...))))).......... ( -18.40) >consensus __UUCAUUUAAUUUCGCUUAA_AAGCGCCAAAAGUUAAGCUGUAAUCAUUUAAAUGAUUUAUUUAGCUUGAUUU___U_CAUAUCACG__GAUC______GCCGCUUGACAUUUCCUC_U ..............((((.....))))....(((((((((((.((((((....))))))....))))))))))).............................................. (-11.67 = -12.62 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:58 2006