Locus 5627

Sequence ID 2L_DroMel_CAF1
Location 15,964,514 – 15,964,627
Length 113
Max. P 0.972205
window8931

overview

Window 1

Location 15,964,514 – 15,964,627
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 99.12
Mean single sequence MFE -34.58
Consensus MFE -33.54
Energy contribution -33.54
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.73
Structure conservation index 0.97
SVM decision value 1.69
SVM RNA-class probability 0.972205
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15964514 113 - 22407834
CCUUUGGGAAUGCGCACUAAAACACACUAGCACACUCUCGUUCGGACAGAGAGUGCAGAAGGAAACAGAAAUCGGGGACAGACAGCCGACACUGGGAGUGUCGCACAAAGGAC
((((((....((((((((..............(((((((.........)))))))(((..(....).....((((..........))))..)))..)))).)))))))))).. ( -33.90)
>DroSec_CAF1 140143 113 - 1
CCUUUGGGAAUGCGCACUAAAACACACUAGCACACUCUCGUUCGGACAGAGAGUGCAGAAGGAAACAGAAAUCGGGGACAGACAGCCGACACUGGGAGUGUCGCACAAAGGAC
((((((....((((((((..............(((((((.........)))))))(((..(....).....((((..........))))..)))..)))).)))))))))).. ( -33.90)
>DroSim_CAF1 142276 113 - 1
CCUUUGGGAAUGCGCACUAAAACACACUAGCACACUCUCGUUCGGACAGAGAGUGCAGAAGGAAACAGAAAUCGGGGACAGACAGCCGACACUGGGAGUGUCGCACAAAGGAC
((((((....((((((((..............(((((((.........)))))))(((..(....).....((((..........))))..)))..)))).)))))))))).. ( -33.90)
>DroEre_CAF1 127342 113 - 1
CCUUUGGGAAUGCGCACUAAAACACACUAGCACACUCUCGUUCGGACAGAGAGUGCAGAAGGAAACAGAAAUCGGGGACAGACUGCCGACACUGCGAGUGUCGCACAAAGGAC
((((((....((((((((...............((((((.........))))))((((..(....).....((((.(......).))))..)))).)))).)))))))))).. ( -36.20)
>DroYak_CAF1 122132 113 - 1
CCUUUGGGAAUGCGCACUAAAACACACUAGCACACUCUCGUUCGGACAGAGAGUGCAGAAGGAAACAGAAAUCGGGGACAGACAGCCGACACUGCGAGUGUCGCACAAAGGAC
((((((....((((((((...............((((((.........))))))((((..(....).....((((..........))))..)))).)))).)))))))))).. ( -35.00)
>consensus
CCUUUGGGAAUGCGCACUAAAACACACUAGCACACUCUCGUUCGGACAGAGAGUGCAGAAGGAAACAGAAAUCGGGGACAGACAGCCGACACUGGGAGUGUCGCACAAAGGAC
((((((....((((((((..............(((((((.........)))))))(((..(....).....((((..........))))..)))..)))).)))))))))).. (-33.54 = -33.54 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:55 2006