Locus 5625

Sequence ID 2L_DroMel_CAF1
Location 15,941,366 – 15,941,462
Length 96
Max. P 0.500000
window8927

overview

Window 7

Location 15,941,366 – 15,941,462
Length 96
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 82.67
Mean single sequence MFE -17.00
Consensus MFE -11.95
Energy contribution -12.25
Covariance contribution 0.31
Combinations/Pair 1.09
Mean z-score -1.43
Structure conservation index 0.70
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15941366 96 - 22407834
GUCAGCAACGGAAGCAGCAAAACUGAAACUAAAGUUAAAUUGAAUUAAAAUUCAGAGCGCUUAAUGUGCCGCAAACA--UACAGGACACACUCGC----------ACA
....((.....((((.((..((((........))))...((((((....)))))).))))))..((((((.......--....)).))))...))----------... ( -18.10)
>DroSec_CAF1 116945 88 - 1
GUCAGCAACGGAAGCAGCAAAACUGAAACUAAAGUUAAAUUGAAUUAAAAUUCAGAGCGCUUAAUGUGCCGCAAACA--UACAGGACACA------------------
(((.((..(....)..))....(((..............((((((....)))))).((((.....))))........--..))))))...------------------ ( -17.30)
>DroSim_CAF1 120322 96 - 1
GUCAGCAACGGAAGCAGCAAAACUGAAACUAAAGUUAAAUUGAAUUAAAAUUCAGAGCGCUUAAUGUGCCGCAAACA--UACAGGACACACUCGC----------ACA
....((.....((((.((..((((........))))...((((((....)))))).))))))..((((((.......--....)).))))...))----------... ( -18.10)
>DroEre_CAF1 103252 106 - 1
GUUAGCAAUGCAAGCAGCAAAACUGAAACUAAAGUUAAAUUGAAUUAAAAUUCCGAGCGCUUAAUGUGCCGAAAAUA--CACAGGACACGCUCGCAAACUCACAAACA
(((.((..(((.....))).((((........))))..................(((((..(..((((.........--))))..)..))))))).)))......... ( -18.40)
>DroYak_CAF1 99227 96 - 1
UUUAGCAACGCAAGCAGCAAAACUGAAACUAAAGUUAAAUUGAAUUAAAAUUCAGAGCGCUUAAUGUGCCGCAAACA--UACAGGACGCACUCAC----------ACA
....((..(....)..))..((((........))))...((((((....)))))).((((((.((((.......)))--)..))).)))......----------... ( -14.90)
>DroAna_CAF1 45490 88 - 1
AUU-----CGAAAGCUGCAAAACUGAAACUAAAGUUAAAUUGAAUUAAAAUUCAGAGCGCUUAAUGUGACACACACUCUUG-----CAAGCUCGC----------AAA
...-----.(..((((((..((((........))))...((((((....)))))).))((.....(((.....)))....)-----).))))..)----------... ( -15.20)
>consensus
GUCAGCAACGGAAGCAGCAAAACUGAAACUAAAGUUAAAUUGAAUUAAAAUUCAGAGCGCUUAAUGUGCCGCAAACA__UACAGGACACACUCGC__________ACA
...........((((.((..((((........))))...((((((....)))))).))))))..((((((.............)).)))).................. (-11.95 = -12.25 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:52 2006