| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,934,008 – 15,934,098 |
| Length | 90 |
| Max. P | 0.602528 |
| Location | 15,934,008 – 15,934,098 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 85.27 |
| Mean single sequence MFE | -34.36 |
| Consensus MFE | -23.56 |
| Energy contribution | -27.88 |
| Covariance contribution | 4.32 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602528 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15934008 90 + 22407834 GCACCAGACGGGUGGGCGAUGGCACACGUCUCUUUGCCAAAUGCCAGUUAGUACGUUCUGGAGGAGGGGGAGGCGUGUGACUAGCCCGAA ..(((.....)))((((..((((((((((((((((.((.....((((..........)))).))..))))))))))))).)))))))... ( -36.80) >DroSec_CAF1 109522 90 + 1 GCACCAGACGGGUGGGCGAUGGCACACGUCUCUUUGCCAAAUGGCAGUUAGUACGAACUGGAGGAGGGGGAGGCGUGUGACUAGCCCGAA ..(((.....)))((((..(((((((((((((((((((....)))..(((((....))))).....))))))))))))).)))))))... ( -37.30) >DroSim_CAF1 111372 90 + 1 GCACCAGACGGGUGGGCGAUGGCACACGUCUCUUUGCCAAAUGCCAGUUAGUACGAGCUGGAGGAGGGGGAGGCGUGUGACUAGCCCGAA ..(((.....)))((((..((((((((((((((((.((.....((((((......)))))).))..))))))))))))).)))))))... ( -40.10) >DroEre_CAF1 95880 86 + 1 GCACCAGACGGGUGGGCGAUGGCACACGUCUCUGCGCCAAAUGCCAGUUAGCAUGAGCUGGAGGAGGAGA----GCCCGAGUAGCCCGAA ........(((((((((((((.....))))(((.(.((.....((((((......)))))).)).).)))----)))).....))))).. ( -31.60) >DroYak_CAF1 91830 79 + 1 GCACCAGACUGGUAGGCGAUGGCACACGUCUCUUCGCCAAAUUCCAGUUAGUCCGAGCUGAAGGAGGA---------CGAG--GCCCGAA ((..(.((((((..(((((.(((....)))...))))).....)))))).((((...(.....).)))---------))..--))..... ( -26.00) >consensus GCACCAGACGGGUGGGCGAUGGCACACGUCUCUUUGCCAAAUGCCAGUUAGUACGAGCUGGAGGAGGGGGAGGCGUGUGACUAGCCCGAA ..(((.....)))((((.....(((((((((((((.((.....((((((......)))))).))..)))))))))))))....))))... (-23.56 = -27.88 + 4.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:47 2006