Locus 5621

Sequence ID 2L_DroMel_CAF1
Location 15,933,003 – 15,933,114
Length 111
Max. P 0.580590
window8921

overview

Window 1

Location 15,933,003 – 15,933,114
Length 111
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.55
Mean single sequence MFE -25.61
Consensus MFE -20.77
Energy contribution -21.74
Covariance contribution 0.97
Combinations/Pair 1.07
Mean z-score -1.39
Structure conservation index 0.81
SVM decision value 0.09
SVM RNA-class probability 0.580590
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15933003 111 + 22407834
UCACGCGGCGUUGUCAUGGCGCAAUAAAAAUAAAAAUCUAAUUAGUAUGCCGUUGACAGUUUAAUCGUGAUUACGCUGGCAAAAAUGUCAGCUAAGCG--UGGCAGAAGCG-G------U
.(((((.((((((((((((((...(((..............)))...))))).))))))......)))......(((((((....)))))))...)))--))((....)).-.------. ( -30.14)
>DroPse_CAF1 101108 98 + 1
UCACGCGGCGUUGUCAUGGCGCAAUAAAAAUAAAAAUCUAAUUAGUAUGCCGUUGACAGUUUAAUCGUGAUUACGCUGGCAAAAAUGUCAGCUAAGCG----------------------
(((((..(..(((((((((((...(((..............)))...))))).))))))..)...)))))....(((((((....)))))))......---------------------- ( -26.04)
>DroGri_CAF1 79232 108 + 1
UCACGCGGCGCUGUCAUAGCGCAAUAAAAAUAAAAAUCUAAUUAGUAUGCCGUUGACAGUUUAAUCGUGAUUACGCUGGCAAAAAUUUCCACAAAA---------CAGAAA-AAA--CGC
....(((((((((...)))))).........................(((((....)(((.((((....)))).)))))))...............---------......-...--))) ( -18.20)
>DroMoj_CAF1 51551 116 + 1
UCACGCGGCGCUGUCAUAGCGUAAUAAAAAUAAAAAUCUAAUUAGUAUGCCGUUGACAGUUUAAUCGUGAUUACGCUGGCAAAAAUUCCAAAAACC-C--AAGCACAGAAA-AAAACAGC
(((((..(.(((((((..(((((.(((..............))).)))))...))))))).)...)))))....(((((................)-)--.))).......-........ ( -20.93)
>DroAna_CAF1 36450 114 + 1
UCACGCGGCGUUGUCAUGGCGCAAUAAAAAUAAAAAUCUAAUUAGUAUGCCGUUGACAGUUUAAUCGUGAUUACGCUGGCAAAAAUGUCAGCUAAACGGGUGGCGCUAGCGAG------G
...((((((((((((((((((...(((..............)))...))))).)))).......((((..(((.(((((((....))))))))))))))..)))))).)))..------. ( -32.34)
>DroPer_CAF1 128728 98 + 1
UCACGCGGCGUUGUCAUGGCGCAAUAAAAAUAAAAAUCUAAUUAGUAUGCCGUUGACAGUUUAAUCGUGAUUACGCUGGCAAAAAUGUCAGCUAAGCG----------------------
(((((..(..(((((((((((...(((..............)))...))))).))))))..)...)))))....(((((((....)))))))......---------------------- ( -26.04)
>consensus
UCACGCGGCGUUGUCAUGGCGCAAUAAAAAUAAAAAUCUAAUUAGUAUGCCGUUGACAGUUUAAUCGUGAUUACGCUGGCAAAAAUGUCAGCUAAGCG_______CA_____________
(((((..(..(((((((((((...(((..............)))...))))).))))))..)...)))))....(((((((....)))))))............................ (-20.77 = -21.74 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:46 2006