Locus 5620

Sequence ID 2L_DroMel_CAF1
Location 15,927,895 – 15,927,993
Length 98
Max. P 0.611173
window8920

overview

Window 0

Location 15,927,895 – 15,927,993
Length 98
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 82.42
Mean single sequence MFE -25.70
Consensus MFE -17.72
Energy contribution -18.05
Covariance contribution 0.33
Combinations/Pair 1.15
Mean z-score -1.70
Structure conservation index 0.69
SVM decision value 0.16
SVM RNA-class probability 0.611173
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15927895 98 + 22407834
GGUUAAGUAUGUGGGUUAAUUGCAUAAGUUAAAGCCGAAUGAAGCGGCUAUUUAAAUUAUUGCACACCACGUGUGCCCCUCAGAU--GGGCAAA------AAAAGG
.......(((((((......(((((((.(((((((((.......)))))..)))).))).))))..)))))))(((((.......--)))))..------...... ( -26.60)
>DroSec_CAF1 103043 97 + 1
GGUUAAGUAUGUGGGUUAAUUGCAUAAGUUAAAGCCGAAUGAAGCGGCUAUUUAAAUUAUUGCAUACCGCGUGUGUCCCUCAGUU--GGGCAAA-------AAAGG
.......(((((((......(((((((.(((((((((.......)))))..)))).))).))))..)))))))((.(((......--)))))..-------..... ( -24.80)
>DroSim_CAF1 105057 97 + 1
GGUUAAGUAUGUGGGUUAAUUGCAUAAGUUAAAGCCGAAUGAAGCGGCUAUUUAAAUUAUUGCAUACCACGUGUGUCCCUCAGUU--GGGCAAA-------AAAGG
.......(((((((......(((((((.(((((((((.......)))))..)))).))).))))..)))))))((.(((......--)))))..-------..... ( -25.20)
>DroEre_CAF1 89899 103 + 1
GGUUAAGCAUGUGGGUUAAUUGCAUAGGUUAAAGCCGAGUGAAGCGGCGAUUUAAAUUAUUGCA-ACCACGUGUGUCCCUGAGAU--GGACAAAAGUGCAAAAAAG
......((((((((.....((((((((.((((.((((.......))))...)))).))).))))-)))))))))((((.......--))))............... ( -26.80)
>DroYak_CAF1 84505 96 + 1
GGUUAAGCAUGUGGGUUAAUUGCACAAGUUAAAGCCGAAUGAAGCCGCGAUUUAAAUUAUUGCAUACCACGUGUGUCCCUGAGAU--GG--------GCAGAAAAG
......((((((((.((((((.....))))))..............(((((.......)))))...))))))))(.(((......--))--------))....... ( -22.70)
>DroAna_CAF1 27401 92 + 1
GG-CAGGCAUAUGGGUUAAUUGCAUAAAUUAAAGCCGCAUGAAGCGGCUAUUUAAAUUAUUUUCCACCACGUGU--CACGGAACUACCGGCAAA-------A----
.(-(.((((..(((.((((((.....))))))((((((.....)))))).................)))..)))--).(((.....)))))...-------.---- ( -28.10)
>consensus
GGUUAAGCAUGUGGGUUAAUUGCAUAAGUUAAAGCCGAAUGAAGCGGCUAUUUAAAUUAUUGCAUACCACGUGUGUCCCUCAGAU__GGGCAAA_______AAAGG
((....((((((((......(((((((.(((((((((.......))))..))))).))).))))..))))))))...))........................... (-17.72 = -18.05 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:45 2006