Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,912,696 – 15,912,800 |
Length | 104 |
Max. P | 0.883119 |
Location | 15,912,696 – 15,912,800 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 79.07 |
Mean single sequence MFE | -30.12 |
Consensus MFE | -19.83 |
Energy contribution | -20.75 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.41 |
Mean z-score | -1.90 |
Structure conservation index | 0.66 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883119 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15912696 104 - 22407834 CACCACUUCUAGAUCCUAAUUGGCACCGCUACCAACCUAAAACCCACAAGCAGCCACCACGAGGCCUCAAUUGCACUUUGUGGUUGGUUGGCUUGGCGGUGCGG ......................(((((((((((((((......((((((((((((.......)))......)))...))))))..))))))..))))))))).. ( -36.30) >DroSec_CAF1 88962 100 - 1 CACCACUUCUGGAUCCUAAUUGGCACCGCCACCGACCUAAAACCCACAACCAGCCACCACGAGGCCUCAAUUGCACUUUGUGGU----UGGCUUGGUGGUGCGG ..(((....)))..........(((((((((....................(((((((((((((...........)))))))).----)))))))))))))).. ( -33.75) >DroSim_CAF1 90163 100 - 1 CACCACUUCUGGAUCCUAAUUGGCACCGCCACCGACCUAAAACCCACAAGCAGCCACCACGAGGCCUCAAUUGCACUUUGUGGU----UGGCUUGGCGGUGCGG ..(((....)))..........(((((((((....................(((((((((((((...........)))))))).----)))))))))))))).. ( -35.65) >DroEre_CAF1 76980 98 - 1 CACCACUUCUACAUUACAAUACUUACCGCCACCCACC-AAAACCCCCGAGCAGCCACCACGAGGCCUCAAUUGCACUUUGUGGU----UGG-UUGGCGGUGCGG .....................(.((((((((((.(((-.........(((..(((.......))))))....((.....)))))----.))-.)))))))).). ( -26.70) >DroYak_CAF1 68717 100 - 1 CCCCACUUUUAGAUCCUAAUUGGCACCGCCGCCGACCUAAAACCUCCGAUCAGUCACCACGAGACCUCAAUUGCACUUUGUAGU----UGGCUUGGCAGUGCGG ..((.(..((((...))))..)((((.(((((((((................(((.......)))......(((.....)))))----))))..))).)))))) ( -23.60) >DroAna_CAF1 15931 91 - 1 CACC-CUUUACAUUUCUAAUUGGCACCACG--------AAAGCCACGAAGAUGCCGCCACAACGCCUCAAUUACACUUUGUGGU----UUUAAAGGCGGCGUAG ....-...(((...(((...((((......--------...))))...))).((((((..((.(((.(((.......))).)))----.))...))))))))). ( -24.70) >consensus CACCACUUCUAGAUCCUAAUUGGCACCGCCACCGACCUAAAACCCACAAGCAGCCACCACGAGGCCUCAAUUGCACUUUGUGGU____UGGCUUGGCGGUGCGG ......................(((((((((....................(((((((((((((...........))))))))).....))))))))))))).. (-19.83 = -20.75 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:43 2006