Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,910,570 – 15,910,672 |
Length | 102 |
Max. P | 0.781451 |
Location | 15,910,570 – 15,910,672 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 85.22 |
Mean single sequence MFE | -26.32 |
Consensus MFE | -19.10 |
Energy contribution | -20.30 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.96 |
Structure conservation index | 0.73 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781451 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15910570 102 + 22407834 CACCACCGUCAGUUGCCCUCAACCUCAACCUCGGCUUCGUCCUCACCCGCAAGCCUGUCCUCGA----------CAUCCGCAUUGCUCGAGGGCUACUUUACACGGUGUCAG ...((((((.(((.((((((............(((((((........)).)))))((((...))----------))............)))))).)))....)))))).... ( -32.30) >DroSec_CAF1 86889 101 + 1 CACCACCGUCA-UUGCCCUCAACCUCAACCUCGUCUUCGUCCUCACCCGCUAGCCUGUCCUCGA----------CAUCCGCAUUGCUCGAGGGCUACUUUACACGGUGUCAG ...((((((..-..((((((...........((....)).........((..((.((((...))----------))...))...))..))))))........)))))).... ( -23.60) >DroSim_CAF1 87748 97 + 1 CACCACCGUCAGUUGCCCUCAACCUCAACCUCGUCUUCGUCCUCACCCGCUAGCCUGUCCUCGA----------CAUCCGCAUUGCUCGAGGGCUACUUUACACGGU----- ....(((((.(((.((((((...........((....)).........((..((.((((...))----------))...))...))..)))))).)))....)))))----- ( -23.60) >DroEre_CAF1 74854 104 + 1 CACCUCCGUCAGUUGCCCUCG------ACCUCGUCUUCGUCCUCAUCCGCCAGCCUGUCCUCGU--GUCCUCGUCAUCCGCAUUGCUCGAGGGCUACUUUACACGGUGUCAA ((((......(((.(((((((------(...((....)).........((..((.......((.--.....))......))...)))))))))).)))......)))).... ( -23.72) >DroYak_CAF1 66581 103 + 1 AACCUCCGUCAGUUGCCCUCA------ACCUCGUCUUCGUCCUCAUCCGCAAGCCUCUCCUCGACAGUGCU---CCUCCGCAUUGCUCGAGGGCUACUUUACACGGUGUCAG ...(.((((.(((.((((((.------.....(.(((((........)).))).).......((((((((.---.....)))))).)))))))).)))....)))).).... ( -28.40) >consensus CACCACCGUCAGUUGCCCUCAACCUCAACCUCGUCUUCGUCCUCACCCGCAAGCCUGUCCUCGA__________CAUCCGCAUUGCUCGAGGGCUACUUUACACGGUGUCAG ...((((((.(((.((((((................(((....((..(....)..))....)))...............((...))..)))))).)))....)))))).... (-19.10 = -20.30 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:42 2006