Locus 5616

Sequence ID 2L_DroMel_CAF1
Location 15,908,662 – 15,908,756
Length 94
Max. P 0.991525
window8916

overview

Window 6

Location 15,908,662 – 15,908,756
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 74.89
Mean single sequence MFE -26.40
Consensus MFE -21.56
Energy contribution -22.24
Covariance contribution 0.68
Combinations/Pair 1.28
Mean z-score -1.92
Structure conservation index 0.82
SVM decision value 2.27
SVM RNA-class probability 0.991525
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15908662 94 - 22407834
GGCGAUACAAACGGAAAGUGCUUUCCUAGGCUCCCCGGAUACAAAAUGUAUCUGAAGCUAUUGCCCAACGGCUGAUUCGGGAACUUGGAAAUUC
.(((...(....).....)))(((((.(((.(((((((((((.....))))))).(((..((....))..))).....)))).))))))))... ( -24.70)
>DroSec_CAF1 83632 94 - 1
GGCGAUACAAACGGAAAGUGUUUUUCUAGGCUCCCCGGAUACAAAAUGUAUCUGAAGCUAUUGCACAAUGGCUGAUGUGGGAACUUGGGAAUUC
...(((((.........)))))((((((((.(((((((((((.....))))))).(((((((....))))))).....)))).))))))))... ( -29.60)
>DroSim_CAF1 83191 94 - 1
GGCGAUACAAACGGAAAGUGAUUUCCUAGGCUCCCCGGAUACAAAAUGUAUCUGAAGCUAUUGCACAAUGGUUGAUGUGGGAACUUGGGAAUUC
...................((.((((((((.(((((((((((.....))))))).(((((((....))))))).....)))).)))))))).)) ( -30.10)
>DroEre_CAF1 71764 71 - 1
GGA-------------------CUCCCAGGCUCCCCGGAUAUGAAAUGUAUCUGAAGCUGUUGC---ACGGCGGACUC-GGGACUUGGGAAUUC
(((-------------------.(((((((.(((((((((((.....)))))))..((((....---.))))......-))))))))))).))) ( -30.10)
>DroYak_CAF1 63049 74 - 1
UGA-------------------UUUCUAGGCUCCCCGGAUACAAAAUGUAUUUGAAGCUAUUGCGCAACGACCGACUC-GGAAAUUGGGAAUUC
.((-------------------(((((((..(((.(((((((.....)))))))..((....))..............-)))..))))))))). ( -17.50)
>consensus
GGCGAUACAAACGGAAAGUG_UUUCCUAGGCUCCCCGGAUACAAAAUGUAUCUGAAGCUAUUGCACAACGGCUGAUUCGGGAACUUGGGAAUUC
......................((((((((.(((((((((((.....)))))))..((((((....))))))......)))).))))))))... (-21.56 = -22.24 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:41 2006