| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,907,043 – 15,907,147 |
| Length | 104 |
| Max. P | 0.523181 |
| Location | 15,907,043 – 15,907,147 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 67.76 |
| Mean single sequence MFE | -30.71 |
| Consensus MFE | -16.92 |
| Energy contribution | -17.15 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.55 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.523181 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15907043 104 + 22407834 CGAAAGUGAAGGCGGUGGAGGCGUAGAGCCCAACAAACUCAUCCGCCGACGUACAGUGUCAUUCAUAUGUAUAAAUAUAAUUUGACAAAUUUGUACGGAUGUUU------------ (....)......((((((((((.....)))...........))))))).((((((((((((....(((((....)))))...)))))...))))))).......------------ ( -28.10) >DroEre_CAF1 69982 101 + 1 CGAAAGUGAAGGCGGUGGUGGCGAUGAGCGCAACAAACCCAUCCA-CGCCGCACAGUGUCAUAUCG----------AUGCUUUGAUAAA-GCGUUACUAUGUUUC---AAUCUCAU .((...((((((((.((((((((.((.................))-)))))).)).)))).....(----------((((((.....))-))))).......)))---)...)).. ( -26.33) >DroYak_CAF1 61295 102 + 1 CGAAAGUGAAGGCGGUGGUGGCGAUGAGCUCAAC----UCAUCCACCGCCGCACAGUGUCACAUCG----------AUGCUUUGAUAAAAUCGUAACAAUGUUUGGGGGAGCUCGG .....((((..((((((((((..(((((.....)----))))))))))))))......))))..((----------(.(((((..((((..(((....)))))))..)))))))). ( -37.70) >consensus CGAAAGUGAAGGCGGUGGUGGCGAUGAGCCCAACAAACUCAUCCACCGCCGCACAGUGUCAUAUCG__________AUGCUUUGAUAAA_UCGUAACAAUGUUU_____A_CUC__ .....(((..((((((((.(((.....)))............)))))))).)))..(((((.....................)))))............................. (-16.92 = -17.15 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:40 2006