| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,906,050 – 15,906,145 |
| Length | 95 |
| Max. P | 0.587198 |
| Location | 15,906,050 – 15,906,145 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 80.78 |
| Mean single sequence MFE | -31.48 |
| Consensus MFE | -20.42 |
| Energy contribution | -20.15 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.587198 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15906050 95 + 22407834 -ACGACCAUAGGAAGACUAUUUAGAAACCGUUGCUGUUCUAUUUUGGCCAGGCCAACAGAAGAGGGCCAACAACGCUGCUGCC------------AACUUGGCGGCAC -......((((.....))))........(((((.((..(......)..))((((..(....)..))))..))))).(((((((------------.....))))))). ( -26.20) >DroPse_CAF1 71826 106 + 1 GGCGAC--GGGUUUGACUAUUUAGAAACCGUUGCUGUUCUAUUUUGGCCAGGCCAACAGAAGAGGGCCAGCAACGCCACUGCCACUGCUGCCACUAACUUGGCAGUAA (((...--.(((((..........)))))(((((((((((.(.(((((...))))).)....)))).))))))))))........((((((((......)))))))). ( -38.10) >DroSim_CAF1 80528 95 + 1 -ACGACCAUAGGAAGACUAUUUAGAAACCGUUGCUGUUCUAUUUUGGCCAGGCCAACAGAAGACGGCCAACAACGCUGCUGCC------------AACUUGGCGGCAC -.((...((((.....)))).........((((((((..(...(((((...)))))...)..)))).))))..)).(((((((------------.....))))))). ( -27.90) >DroYak_CAF1 60325 95 + 1 -GCGAGCAUAGAAAGACUAUUUAGAAACCGUUGCUGUUCUAUUUUGGCCAGGCCAACAGAAGAGGGCCAACAGCGCUGCUGCC------------AACUUGGCGGCAA -...(((((((.....))))............(((((((......)....((((..(....)..)))))))))))))((((((------------.....)))))).. ( -28.40) >DroAna_CAF1 8532 95 + 1 -AUAUUAGACGUCAGACUAUUUAGAAACCGUUGCUGUUCUAUUUUGGCCAGGCCAACAGAAGAGGGCCAGCAACGGCGCCGCC------------GACUUGGCACUGA -..........((((............(((((((((((((.(.(((((...))))).)....)))).))))))))).((((..------------....)))).)))) ( -30.20) >DroPer_CAF1 99582 106 + 1 GGCGAC--UGGUUUGACUAUUUAGAAACCGUUGCUGUUCUAUUUUGGCCAGGCCAACAGAAGAGGGCCAGCAACGCCACUGCCACUGCUGCCACUAACUUGGCAGUAA (((...--.(((((..........)))))(((((((((((.(.(((((...))))).)....)))).))))))))))........((((((((......)))))))). ( -38.10) >consensus _ACGACCAUAGUAAGACUAUUUAGAAACCGUUGCUGUUCUAUUUUGGCCAGGCCAACAGAAGAGGGCCAACAACGCCGCUGCC____________AACUUGGCAGCAA ............................(((((.((..(......)..))((((..(....)..))))..))))).(((((((.................))))))). (-20.42 = -20.15 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:39 2006