Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,902,437 – 15,902,535 |
Length | 98 |
Max. P | 0.507838 |
Location | 15,902,437 – 15,902,535 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 75.22 |
Mean single sequence MFE | -25.68 |
Consensus MFE | -13.40 |
Energy contribution | -13.32 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.45 |
Mean z-score | -1.60 |
Structure conservation index | 0.52 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507838 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15902437 98 - 22407834 GGUUUUGGAGAUCAAAUUCGUGGUGACGGUACAUCACUUCAUCAAGAGUCGCUUAAAGGUAAGUCGACAUUCCUUAGCAGCAAAAGAACAAACAAA-------AA .(((..((((.......((.((((((.(((.....))))))))).))((((((((....)))).)))).))))..)))..................-------.. ( -21.40) >DroSec_CAF1 77398 98 - 1 GGUUUUGGAGAUCAAGUUCGUAGUGACAGUACAUCACUACAUCAAGAGUCGCUUAAAGGUAAGUCGACAUUCCUUAUCAUUGCUAGAACCAACAAA-------AA ((((((((.(((.(((...(((((((.......))))))).......((((((((....)))).))))....))))))....))))))))......-------.. ( -27.20) >DroSim_CAF1 76964 98 - 1 GGUUUUGGAGAUCAAGUUUGUGGUGACAGUACAUCACUACAUCAAGAGUCGCUUGAAGGUAAGUCGACAUAUCUUACCAUUGCUGGAGCCAACAAA-------AA (((((..(...((((((.((((((((.......)))))))).........)))))).((((((.........))))))....)..)))))......-------.. ( -29.10) >DroEre_CAF1 65280 97 - 1 GGUGUUGGAGAUCAAAUUCGUGGUCACGGUGCACCACUUCAUCAAGAGUCGCUUAAAGGUGAGUUGGCAUACCUCAGCAUCUGUGGAACCUAC-AA-------AA ((((((((.(((((......)))))..((((..(((.(((((((((.....)))...)))))).)))..))))))))))))(((((...))))-).-------.. ( -28.10) >DroYak_CAF1 56770 98 - 1 GGUUUUGGAGAUCAAAUUCGUGGUGACAGUGCAUCACUUCAUCAAGAGUCGCUUAAAGGUGAGCUGGCAUUCGAUACCAUAUGUGGAGCCUACCAA-------AA (((.(((((..(((.((((.((((((.((((...)))))))))).)))).(((((....))))))))..))))).))).....(((......))).-------.. ( -25.40) >DroPer_CAF1 93425 96 - 1 UGUUCUGGAAAUCAAUUUCGUGGUGACCGUGCAUCACUUUAUAAAGGGACGCUUGAAGGUUGGCUCUGAUC---------UAGUCAAACCAACUAUAUAGCCUAA .(((((.((((....))))((((((......))))))........)))))(((....((((((...((((.---------..))))..))))))....))).... ( -22.90) >consensus GGUUUUGGAGAUCAAAUUCGUGGUGACAGUACAUCACUUCAUCAAGAGUCGCUUAAAGGUAAGUCGACAUUCCUUACCAUUAGUGGAACCAACAAA_______AA ((((((.............((((((......))))))..........((((((((....)))).))))................))))))............... (-13.40 = -13.32 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:38 2006