Locus 5612

Sequence ID 2L_DroMel_CAF1
Location 15,898,184 – 15,898,274
Length 90
Max. P 0.692760
window8912

overview

Window 2

Location 15,898,184 – 15,898,274
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 84.92
Mean single sequence MFE -36.78
Consensus MFE -29.12
Energy contribution -29.32
Covariance contribution 0.20
Combinations/Pair 1.25
Mean z-score -2.04
Structure conservation index 0.79
SVM decision value 0.33
SVM RNA-class probability 0.692760
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15898184 90 - 22407834
GAUAUUCCUUUUCGGAAUAUCCGAGGCCCGCAAAGGAUUUGGUCCUGGCGAACAGGACUGGGGUUAUGUGGACGUCCGCGAUGGGGCUCA
((((((((.....)))))))).(((.(((((......((..((((((.....))))))..)).....((((....))))).)))).))). ( -40.70)
>DroGri_CAF1 39962 82 - 1
-----UCCAUCUU-GA--AUUUGAAGCGCGUCGCGGCUUUGGUCCCGGUGAUCAGGACUGGGGCUAUGUGGAGGUACGCGAGGGAGCUCA
-----........-..--.......(((..((.(.((..((((((((((.......)))))))))).)).).))..)))(((....))). ( -29.30)
>DroSec_CAF1 73251 85 - 1
-----UCCUGUUCGGAAUAUCCGAGGCCCGCAAAGGAUUUGGUCCUGGCGAACAGGACUGGGGUUACGUGGACGUCCGCGAUGGGGCGCA
-----.....(((((.....)))))((((.((.....((..((((((.....))))))..))....(((((....))))).))))))... ( -36.20)
>DroSim_CAF1 73161 85 - 1
-----UCCUGUUCGGAAUAUCCGAGGCCCGCAAAGGAUUUGGUCCUGGCGAACAGGACUGGGGUUACGUGGACGUCCGCGAUGGGGCGCA
-----.....(((((.....)))))((((.((.....((..((((((.....))))))..))....(((((....))))).))))))... ( -36.20)
>DroEre_CAF1 61129 85 - 1
-----UCCUGUUCGGAAUUUCCGAGGCCCGCAAAGGAUUUGGUCCUGGCGAGCAGGACUGGGGCUACGUGGACGUCCGCGAAGGGGCGCA
-----.....(((((.....)))))((((........((..((((((.....))))))..)).((.(((((....))))).))))))... ( -35.60)
>DroYak_CAF1 52376 85 - 1
-----UCCUGCUCGGAAUUUCCGAGGCCCGCAAAGGAUUUGGGCCUGGCGAGCAGGACUGGGGUUACGUGGACGUCCGCGAUGGGGCCCA
-----((((((((((.....)).(((((((.........)))))))...))))))))...(((((.(((((....)))))....))))). ( -42.70)
>consensus
_____UCCUGUUCGGAAUAUCCGAGGCCCGCAAAGGAUUUGGUCCUGGCGAACAGGACUGGGGUUACGUGGACGUCCGCGAUGGGGCGCA
..........(((((.....)))))((((.((.....((..((((((.....))))))..))....(((((....))))).))))))... (-29.12 = -29.32 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:37 2006