Locus 5611

Sequence ID 2L_DroMel_CAF1
Location 15,897,002 – 15,897,122
Length 120
Max. P 0.860593
window8911

overview

Window 1

Location 15,897,002 – 15,897,122
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.39
Mean single sequence MFE -42.98
Consensus MFE -23.75
Energy contribution -23.50
Covariance contribution -0.24
Combinations/Pair 1.38
Mean z-score -2.13
Structure conservation index 0.55
SVM decision value 0.83
SVM RNA-class probability 0.860593
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15897002 120 - 22407834
AAAGGCAUACUUCAGGGUUACAAAAAGGUCGGAGGCAACUUCGGGAUGUACUGGAUAAAUCGGUCGGGCCACAUGGCCCCGUCAGAUAAUCCAGUCGCCAUGCAGUAUGUCCUUCAAUCC
.((((((((((.((.(((..........((((((....))))))...(.(((((((..(((((..(((((....)))))..)).))).))))))))))).)).)))))).))))...... ( -46.10)
>DroPse_CAF1 60814 120 - 1
GCGGACAGACUUCAGGGCUACGAGAAGGUCGGCGGCCGAUUCGGCAUGUACUGGAUCAAUCGCUCCGGCCACCAGGCCCCCGCCGACAAUCCCACUGCAAUGCAGUAUGUCCUGAAAGCC
..........((((((((...(.((..((((((((..(((((((......))))))).........((((....)))).))))))))..)).)(((((...)))))..)))))))).... ( -49.50)
>DroEre_CAF1 59936 120 - 1
AAGGGCAUUCUUCAGGGUUACGAAAAGGUCGGAGGCAACUUCGGCAUGUACUGGAUAAAUCGCUCGGGCCACCUGGUGCCCUCAGAUAAUCCUGUUGCCAUGCAGUACGUCCUCAAGUCC
.(((((...((.((.(((.(((.....(((((((....))))))).......((((..(((....(((((.....).))))...))).))))))).))).)).))...)))))....... ( -37.10)
>DroWil_CAF1 8795 120 - 1
AAUAACAGACUUCAGGGCUAUGAAAAAGUUGGCGGAAAUUUUGGAAUGUAUUGGAUAAACCGAGCGGGGCACAUGGCCCUAGCUGAUAAUCCUACCGCCAUGCAUCAUGUUUUAAAAGCG
.......(.(((.(((((.((((......((((((.......(((.(((.((((.....))))(((((((.....))))).))..))).)))..))))))....)))))))))..)))). ( -29.60)
>DroYak_CAF1 51177 120 - 1
AAAGGCAUACUGCAGGGUUACGAAAAGGUCGGAGGAAACUUCGGCAUGUACUGGAUAAAUCGGUCGGGCCACAUGGCCCCCUUAGAUAAUCCUGUUGCCAUGCAGUACGUCCUCAAAUCC
...(((.(((((((.(((.(((.....(((((((....))))))).......((((..(((....(((((....))))).....))).))))))).))).))))))).)))......... ( -47.60)
>DroPer_CAF1 87067 120 - 1
GCAGACAGACUUCAGGGCUACGAGAAGGUCGGCGGCCGAUUUGGCAUGUACUGGAUCAAUCGCUCCGGCCACCAGGCCCCCGCCGACAAUCCCACUGCAAUGCAGUAUGUCCUGAAAGCC
..........((((((((...(.((..((((((((..((((..(......)..)))).........((((....)))).))))))))..)).)(((((...)))))..)))))))).... ( -48.00)
>consensus
AAAGACAGACUUCAGGGCUACGAAAAGGUCGGAGGCAACUUCGGCAUGUACUGGAUAAAUCGCUCGGGCCACAUGGCCCCCGCAGAUAAUCCUACUGCCAUGCAGUAUGUCCUCAAAGCC
...((((.(((.((.(((.........(((.((((....(((((......)))))..........(((((....))))))))).))).........))).)).))).))))......... (-23.75 = -23.50 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:36 2006