Locus 5610

Sequence ID 2L_DroMel_CAF1
Location 15,894,557 – 15,894,655
Length 98
Max. P 0.756549
window8910

overview

Window 0

Location 15,894,557 – 15,894,655
Length 98
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 82.72
Mean single sequence MFE -23.68
Consensus MFE -17.04
Energy contribution -17.40
Covariance contribution 0.36
Combinations/Pair 1.14
Mean z-score -2.13
Structure conservation index 0.72
SVM decision value 0.49
SVM RNA-class probability 0.756549
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15894557 98 - 22407834
AUUCUCUAACAAUUUACUCAAAAUUAACUGAAUCCCUACUG----------CCUUCCCUUCCAAACUUUCUGGCUGGGAUGCGGUCGGCCGCAUCACACGGACAGACA
...........................(((....((.((((----------(..((((..(((.......)))..)))).))))).))(((.......))).)))... ( -23.60)
>DroPse_CAF1 58627 105 - 1
AUUUUCUAACAAUUUACUCGAAAUUAACUGAAAUUCGUUUGGCAGCCUCCUUCUUCCGCUCCA---UCUCUGGUUGCCAUGCGGUUCGCCGCACUACACGGACAGACA
...........................(((...(((((.((((((((................---.....))))))))(((((....)))))....))))))))... ( -25.20)
>DroSec_CAF1 69636 98 - 1
AUUCUCGAACAAUUUACUCAAAAUUAACUGAAUCCCUUCUG----------CCUUCCCUUCCAAACUUUCUGGCUGGGAUGCGGUCGGCCGCAUUACACGGACAGACA
.....................................((((----------((.((((..(((.......)))..))))(((((....)))))......)).)))).. ( -23.80)
>DroEre_CAF1 57463 98 - 1
AUUCUCUAACAAUUUACUCAAAAUUAACUGAAUCCCUACUG----------CCUUCCCUUCCAAACUUUCUGGCUGGGAUGCGGUUGGCCGCAUCACACGGACAGACA
...........................(((....((.((((----------(..((((..(((.......)))..)))).))))).))(((.......))).)))... ( -23.60)
>DroYak_CAF1 48644 98 - 1
AUUCUCUAACAAUUUACUCAAAAUUAACUGAAACCCUACUG----------CCUUCCCUUCGAAACUUUCUGGCUGGGAUGCGGUUGGCCGCAUCACACGGACAGACA
.........................................----------.................((((.(((.(((((((....)))))))...))).)))).. ( -20.70)
>DroPer_CAF1 84881 105 - 1
AUUUUCUAACAAUUUACUCGAAAUUAACUGAAAUUCGUUUGGCAGCCUCCUUCUUCCGCUCCA---UCUCUGGUUGCCAUGCGGUUCGCCGCACUACACGGACAGACA
...........................(((...(((((.((((((((................---.....))))))))(((((....)))))....))))))))... ( -25.20)
>consensus
AUUCUCUAACAAUUUACUCAAAAUUAACUGAAACCCUACUG__________CCUUCCCUUCCAAACUUUCUGGCUGGGAUGCGGUUGGCCGCAUCACACGGACAGACA
....................................................................((((.(((.(((((((....)))))))...))).)))).. (-17.04 = -17.40 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:35 2006