Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,888,320 – 15,888,440 |
Length | 120 |
Max. P | 0.897961 |
Location | 15,888,320 – 15,888,440 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.50 |
Mean single sequence MFE | -42.68 |
Consensus MFE | -36.74 |
Energy contribution | -37.10 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.09 |
Mean z-score | -1.55 |
Structure conservation index | 0.86 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897961 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15888320 120 - 22407834 CAUUCAAGAAACCCGUAAAGGGCCACGUCGUCGCUACGAUCGAGGGCAGCUCGACCGAGCAGAGCCUGCCCAUUGAUGGAGAGGUGAAUGUGGAGUUUCCCAUUUCAGCGACUGCCAAGA ...........(((.....)))....((.((((((.(.((((((((((((((.........))).)))))).))))).)......(((.((((......))))))))))))).))..... ( -40.90) >DroSec_CAF1 61758 120 - 1 CAUUCAAGAAACCCGUAAAGGGCCACGUCGUCGCUUCGAUCGAGGGCAGCUCGACAGAGAAGAGCCUGCCCAUUGAUGGAGAGGUGAAUGUGGAGUUUCCCAUUUCAGCGACAGCCAAGA .......(((((((.....)))((((((..(((((((.((((((((((((((.........))).)))))).)))))...))))))))))))).........)))).((....))..... ( -42.50) >DroSim_CAF1 61954 120 - 1 CAUUCAAGAAACCCGUAAAGGGCCACGUCGUCGCUUCGAUCGAGGGCAGCUCGACAGAGAAGAGCCUGCCCAUUGAUGGAGAGGUGAAUGUGGAGUUUCCCAUUUCAGCGACAGCCAAGA .......(((((((.....)))((((((..(((((((.((((((((((((((.........))).)))))).)))))...))))))))))))).........)))).((....))..... ( -42.50) >DroEre_CAF1 51324 120 - 1 CCUUUAAAAAGCCCGUAAAGGGCCACGUCGUCGCUUCGAUCGAGGGCAGCUCGGCGAAGAAAAACCUGCCCAUCGAUGGACAGGUGAAUGUGGAGUUUCCCAUUCCAGCGACCGGCAAGA ..........((((.....))))...(((((((((((.(((((((((((.((......)).....)))))).))))).))...(.(((((.((.....))))))))))))).)))).... ( -45.90) >DroYak_CAF1 40363 120 - 1 CCUUCAGGAAGCCCGUAAAGGGCCACGUCGUCGCUUCGAUCGAGGGCAGUUCGACCGAGAAAAGCCUGCCCAUUGAUGGAGAGGUGAAUGUGGAGUUUCCCAUUUUAGCGACCGCCAAGA ......((((((((.....)).((((((..(((((((.((((((((((((((......)))....)))))).)))))...))))))))))))).))))))..((((.((....)).)))) ( -41.60) >consensus CAUUCAAGAAACCCGUAAAGGGCCACGUCGUCGCUUCGAUCGAGGGCAGCUCGACAGAGAAGAGCCUGCCCAUUGAUGGAGAGGUGAAUGUGGAGUUUCCCAUUUCAGCGACAGCCAAGA ...........(((.....))).......((((((((.((((((((((((((.........))).)))))).))))).)).....(((((.((.....))))))).))))))........ (-36.74 = -37.10 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:34 2006