Locus 5607

Sequence ID 2L_DroMel_CAF1
Location 15,885,481 – 15,885,601
Length 120
Max. P 0.903918
window8905

overview

Window 5

Location 15,885,481 – 15,885,601
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 81.42
Mean single sequence MFE -40.52
Consensus MFE -27.92
Energy contribution -28.44
Covariance contribution 0.52
Combinations/Pair 1.17
Mean z-score -2.13
Structure conservation index 0.69
SVM decision value 1.03
SVM RNA-class probability 0.903918
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15885481 120 + 22407834
ACCAUUUGUGAUCACCUCGCCGAGUGGCCAAUUUAUCCAACUUAUCCAGAACUUUAUAGGCAUUGCGGUUUCUUGCUAAUGACAGGGCCAGGGCGGCAAUGGCCAGAUCAUACGGCUCAU
.((...(((((((.....(((...(((((...........(((((..........)))))((((((((....)))).))))....))))).)))(((....))).))))))).))..... ( -30.70)
>DroSec_CAF1 58949 120 + 1
ACCACUUGUGGUCACCUCGCCGACUGGCCAACCUUUCCAACUUAUCCAGAGCUAUAUUGGCUUUACGUUUACCUGCUAAUGACAGGGCCAGGGCGGCAAUGGCCAGAUCAUACGGCUCAU
.((...(((((((.((..((((.((((((..................((((((.....))))))........((((....).)))))))))..))))...))...))))))).))..... ( -36.30)
>DroSim_CAF1 59145 120 + 1
ACCACUUGUGGUCACCUUGCCGACUGGCCAACCUUUCCAACUUAUCCAGAACUAUAUUGGCUUUACGUUUAUCUGCUAAUGACAGGGCCAGGGCGGCAAUGGCCAGAUCAUACGGCUCAU
.((...(((((((.((((((((.((((((...........((.....)).....(((((((.............)))))))....))))))..)))))).))...))))))).))..... ( -36.02)
>DroEre_CAF1 48509 120 + 1
ACCACUUGUGGUCACCACGCCUCUUGGCCAAACUUUCCAACUUGGUUAAAGUGCUUUGGGCACUGCGAUGUUUUGCUAAUGAAAGGGCCAGGGCGGCGAUGGCCAGAUCAUAGGCGUUAU
..(.(((((((((.(((((((((((((((...(((((............(((((.....)))))((((....))))....))))))))))))).)))).)))...))))))))).).... ( -47.20)
>DroYak_CAF1 36874 120 + 1
ACCACUUGUGGUCGCCAGCCCAAUUGGCCAUUUUUUCCAACUUGGCCAAGGCCCUAUUGGCUUUAGGGUUUUUUGCUAAUGCCAGGGCCAGGGCGGCAAUGGCCAGAUCAUACGGAUUAC
.((...(((((((....((((..(((((((............)))))))((((((...(((.((((.(.....).)))).))))))))).))))(((....))).))))))).))..... ( -52.40)
>consensus
ACCACUUGUGGUCACCUCGCCGACUGGCCAACCUUUCCAACUUAUCCAGAGCUAUAUUGGCUUUACGGUUUUUUGCUAAUGACAGGGCCAGGGCGGCAAUGGCCAGAUCAUACGGCUCAU
....(.(((((((.....(((..((((((...........(((.....)))...(((((((.............)))))))....)))))))))(((....))).))))))).)...... (-27.92 = -28.44 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:30 2006