Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,882,004 – 15,882,112 |
Length | 108 |
Max. P | 0.559420 |
Location | 15,882,004 – 15,882,112 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 86.84 |
Mean single sequence MFE | -20.10 |
Consensus MFE | -13.11 |
Energy contribution | -12.80 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.14 |
Mean z-score | -1.74 |
Structure conservation index | 0.65 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559420 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15882004 108 + 22407834 UAUAUAUACAUAUAUAUGAAAUAUAUA------UAGACCGCUGUACAGUUUGCCAUAAUCUUCAUAUAAACCAUUAUAUAUUUUCAACAUUACUAUGUACGAGCUGUGUUCGUG (((((((((((....)))...))))))------))...(((..(((((((((...........((((((....)))))).......((((....)))).)))))))))...))) ( -15.90) >DroSim_CAF1 55568 102 + 1 UAUAUA------UAUAUGAAAUAUAUA------UGGACCGAUGUACAGUUUGCCAUAUUCUUCAUAUAAACCAUUAUAUAUUUUCAACAUUAGUAUGUACGAGCUGUGUUCGUG ......------((((((((....(((------(((.(.(((.....))).)))))))..)))))))).......(((((((.........)))))))((((((...)))))). ( -18.80) >DroEre_CAF1 44927 99 + 1 UAUAU--------AUAUGAAAUAUAUA------UAGACUGCUACACAGUUUGCCAUAUUCUUCAUAUA-UCCAUUAUAUACUUUCAACAUUAGUAUGUACGAGCUGUGUUCGUG ...((--------(((((((..((((.------(((((((.....)))))))..))))..))))))))-).....(((((((.........)))))))((((((...)))))). ( -23.10) >DroYak_CAF1 32541 106 + 1 UAUAU--------AUAUGAAAUAUAUAUGUAUGUAGACUGCUGCACGGUUUGCCAUUUUCUACAUAUAAACCAUUAUAUAUUUUCAACAUUAGUAUGUACGAGCUGUGUUCGUG .....--------...(((((((((((((((((((((.....(((.....))).....))))))))))......)))))).)))))((((....))))((((((...)))))). ( -22.60) >consensus UAUAU________AUAUGAAAUAUAUA______UAGACCGCUGCACAGUUUGCCAUAUUCUUCAUAUAAACCAUUAUAUAUUUUCAACAUUAGUAUGUACGAGCUGUGUUCGUG ..............((((((.............(((....)))(((((((((...........((((((....)))))).......((((....)))).))))))))))))))) (-13.11 = -12.80 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:29 2006