Locus 5605

Sequence ID 2L_DroMel_CAF1
Location 15,881,644 – 15,881,746
Length 102
Max. P 0.761055
window8903

overview

Window 3

Location 15,881,644 – 15,881,746
Length 102
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 73.77
Mean single sequence MFE -22.30
Consensus MFE -9.18
Energy contribution -9.82
Covariance contribution 0.64
Combinations/Pair 1.32
Mean z-score -2.04
Structure conservation index 0.41
SVM decision value 0.50
SVM RNA-class probability 0.761055
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15881644 102 + 22407834
UCU------UAAAGUUAUUUUUCAAUGUCAUGGGCAUAG----------AA-AUUGUCG-ACAUAUCCUGCGGCUCAUUACCAUGCUCAUGACAUUCCCAGACUGUUUCAACCAACCUCU
...------...((((.......((((((((((((((.(----------.(-((.((((-.((.....))))))..))).).))))))))))))))....))))................ ( -24.90)
>DroPse_CAF1 47935 108 + 1
CUUUCCCUCUGAAGUUCUUUGUCAAUGUCAGGGGGGUAACUGCUCUCCUAC-CUUGUCCAGUAUAUCCUGCGGCCUAUUUCCAUGCUU-UGACAAUGC-----UUUGUC-----CCCCUU
..........(((((...(((((((.((.((((((((....))))))))..-...((((((......))).)))..........)).)-)))))).))-----)))...-----...... ( -26.30)
>DroSec_CAF1 55117 102 + 1
UCU------UAAAGUUAUUUUUCAAUGUCAUGGGCAUAG----------AA-AUUGUCG-ACAUAUCCUGCGGCUCAUUACCAUGCUCCUGACAUCCCCGGGCUGUUUCAACAUACCUCU
...------...............((((((.((((((.(----------.(-((.((((-.((.....))))))..))).).)))))).))))))....((..(((....)))..))... ( -22.00)
>DroSim_CAF1 55208 102 + 1
UCU------UAAAGUUAUUUUUCAAUGUCAUGGGCAUAG----------AA-AUUGUCG-ACAUAUCCUGCGGCUCAUUACCAUGCUCCUGACAUUCCUGGACUGAGUCAAUGUACCUCU
...------...((((.......(((((((.((((((.(----------.(-((.((((-.((.....))))))..))).).)))))).)))))))....))))(((.........))). ( -22.00)
>DroEre_CAF1 44604 91 + 1
ACU------UUAAGUUAUUUUUCAAUGUCAUGGGCAUAG----------AAAAUUGCCG-GCAUAUCCUGCGGC------------UCCUGAUAUUCCCAGACUGUUUCAAUAUACCUCU
...------.................(((.((((.(((.----------......((((-.((.....))))))------------......))).)))))))................. ( -17.42)
>DroYak_CAF1 32179 103 + 1
ACU------UUAAGUUAUUUUUCAAUGUCAUGAGCAUAG----------AAAAUUGCCG-ACAUACCCUGCGGCUCAUUACCACGCUCCUGACAUUCCCCGACUGUUUCACCAUACCUCU
...------...((((.......(((((((.((((....----------......((((-.((.....))))))..........)))).)))))))....))))................ ( -21.15)
>consensus
UCU______UAAAGUUAUUUUUCAAUGUCAUGGGCAUAG__________AA_AUUGUCG_ACAUAUCCUGCGGCUCAUUACCAUGCUCCUGACAUUCCCAGACUGUUUCAACAUACCUCU
.......................(((((((.((((((..................((((..((.....))))))........)))))).)))))))........................ ( -9.18 =  -9.82 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:28 2006