Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,879,988 – 15,880,099 |
Length | 111 |
Max. P | 0.965030 |
Location | 15,879,988 – 15,880,099 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 96.22 |
Mean single sequence MFE | -40.16 |
Consensus MFE | -33.78 |
Energy contribution | -34.34 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -2.05 |
Structure conservation index | 0.84 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965030 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15879988 111 - 22407834 UGGUCCUAGGCUCUCGGUUUUCGGCUCCUACCCACCGGAUCUCGAGGUGUCUCGGCUGGGUGGCGCUCGAAAGCCGAGACUCGCAAAAUUUACCUACUACUUACAUACAGC .(((.....((((((((((((((((.((.(((((((((((........))).))).))))))).)).))))))))))))...)).......)))................. ( -42.60) >DroSec_CAF1 53461 111 - 1 UGGUCCUAGGUUCUCGGUUUUCGGCUCCUAGCCACCGGAUCUCGAGGUGUCUCGGCUGGGUGGCGCUCGAAAGCCGAGACUCGCAAAAUUUAGCUACUACUUACAUACAGC ((((....(..((((((((((((((.....((((((.(...(((((....))))).).)))))))).))))))))))))..)((........)).))))............ ( -39.50) >DroSim_CAF1 53543 111 - 1 UGGUCCUAGGUUCUCGGUUUUCGGCUCCUAGCCACCGGAUCUCGAGGUGUCUCGGCUGGGUGGCGCUCGAAAGCCGAGACUCGCAAAAUUUACCUACUACUUACAUACAGC .(((..(((((((((((((((((((.....((((((.(...(((((....))))).).)))))))).))))))))))))............)))))..))).......... ( -41.10) >DroEre_CAF1 42563 110 - 1 UGGUCCCAGGCUCUCGGUUUUCGCCUCCUAGCCACCGGAUCUCGAGGUGUCUCGGCUGGGUGGCGCUCGAAAGCCGAGACUCGCAAAAUUUACCUACUACUUACAUACAU- .(((.....((((((((((((((((.(((((((....(....)(((....)))))))))).)))....)))))))))))...)).......)))................- ( -39.30) >DroYak_CAF1 30345 111 - 1 UGGUCCUAGGCACUCGGUUUUCGGCUCCUAGCCACCGGAUCUCGAGGUGUCUCGGCUGGAUGGCGCUCGAAAGCCGAGACUUGCAAAAUUUACCUACUACUUACAUACAGC .(((.....((((((((((((((((.....((((((((...(((((....))))))))).)))))).)))))))))))...))).......)))................. ( -38.30) >consensus UGGUCCUAGGCUCUCGGUUUUCGGCUCCUAGCCACCGGAUCUCGAGGUGUCUCGGCUGGGUGGCGCUCGAAAGCCGAGACUCGCAAAAUUUACCUACUACUUACAUACAGC .(((.....((((((((((((((((.....((((((((...(((((....))))))))).)))))).))))))))))))...)).......)))................. (-33.78 = -34.34 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:27 2006