Locus 5603

Sequence ID 2L_DroMel_CAF1
Location 15,878,926 – 15,879,040
Length 114
Max. P 0.500000
window8901

overview

Window 1

Location 15,878,926 – 15,879,040
Length 114
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 84.62
Mean single sequence MFE -28.13
Consensus MFE -19.53
Energy contribution -19.91
Covariance contribution 0.38
Combinations/Pair 1.15
Mean z-score -1.44
Structure conservation index 0.69
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15878926 114 + 22407834
AAUCUAGUAAUGAUUUUAAAAAGUUGAUUAAAAUUUUUUUCCAAUCAAAAAUAAUACAUGGUACUAACUUUUGGUCGGUUAGGCCCAGGCUGAUG---GCGCCUGU---UGUACUGGGCA
..(((((((.(((((..((((((((......))))))))...)))))............(((.((((((.......)))))))))(((((.....---..))))).---..))))))).. ( -27.00)
>DroSec_CAF1 52468 117 + 1
AAUCUAGUAAAAAUUACAAAAUGUUGAUUAAAAUAUUUUCCCAAUCAAUAAGACUACUUGGUACUGACUUUUUGUCGGUAAGGCCCAGCCUGAUG---GCGCCUGUUGUUGUGCUGGGCA
..(((.(((.....)))....((((((((.............)))))))))))........(((((((.....)))))))..(((((((.(((..---((....))..))).))))))). ( -32.92)
>DroSim_CAF1 52523 114 + 1
AAUCUGGUAAUGAUUAUAAAAUGUUGAUUAAAAUAUUUUCCCAAUCAAUAAUAAUACUUGGUACUGACAUUUUGUCGGUGAGGCCCAGCCUGAUG---GCGCCUGU---UGUACUGGGCA
..((..(((.(((((..((((((((......))))))))...)))))..............(((((((.....)))))))(((((((......))---).))))..---..)))..)).. ( -29.50)
>DroYak_CAF1 29194 117 + 1
GAUCUAAUAAUGAUUAUAAAAUGUUGAUUAAAAUAUUUUCCAAAUCAAUAAGAAUAUUUAGUACUGACGUUUGGUCGGGGAGGUCUAGACUGAUGAGGGCGCCUGU---UUUGCUGGGCA
..(((.....(((((..((((((((......))))))))...)))))................(((((.....)))))))).((((((...(((.(((...)))))---)...)))))). ( -23.10)
>consensus
AAUCUAGUAAUGAUUAUAAAAUGUUGAUUAAAAUAUUUUCCCAAUCAAUAAGAAUACUUGGUACUGACUUUUGGUCGGUGAGGCCCAGCCUGAUG___GCGCCUGU___UGUACUGGGCA
..........(((((..((((((((......))))))))...)))))..............(((((((.....)))))))..((((((.........................)))))). (-19.53 = -19.91 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:25 2006