Locus 5600

Sequence ID 2L_DroMel_CAF1
Location 15,876,467 – 15,876,561
Length 94
Max. P 0.500000
window8893

overview

Window 3

Location 15,876,467 – 15,876,561
Length 94
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 88.17
Mean single sequence MFE -39.06
Consensus MFE -25.50
Energy contribution -28.14
Covariance contribution 2.64
Combinations/Pair 1.03
Mean z-score -2.17
Structure conservation index 0.65
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15876467 94 - 22407834
CGUUCGAGGGUCCUGGUUCUGGUCCUG------CUGGGCCCGAAAGUGUGCCUGCAAACUGAGACCAAAGCGCUUAACAUCCUUUUUGGCGCUGGGCCCA
.......(((((((((((..(((..((------(.((((((....).).))))))).)))..))))).((((((.............)))))))))))). ( -40.42)
>DroSec_CAF1 49963 94 - 1
CGUUCGAGGGUCCUGGUUCUGGUCCUG------CUGGGCCCGAAAGUGUGCCUGCAAACUGGGACCCAAGCGCUUAACAUCCUUUUUGGCGCUGGGCCCA
.......((((((.(((((..((..((------(.((((((....).).))))))).))..)))))..((((((.............)))))))))))). ( -43.12)
>DroSim_CAF1 50016 94 - 1
CGUUCGAGGGUCCUGGUUCUGGUCCUG------CUGGGCCCGAAAGUGUGCCUGCAAACUGGGACCAAAGCGCUUAACAUCCUUUUUGGCGCUGGGCCCA
.......((((((((((((..((..((------(.((((((....).).))))))).))..)))))).((((((.............)))))))))))). ( -44.82)
>DroEre_CAF1 40026 99 - 1
CGUUCGAGGGUCCUGGUCCUGGUCCUGGUCCUGCUGGGCCCGAGAGUGGGCCUGCAAACUGGAACCAAAGCGCUUAACAUCCUUUUUGGCGCUGUGC-CA
.((((.((((.((.((.......)).)).))(((.(((((((....))))))))))..)).))))((.((((((.............)))))).)).-.. ( -37.42)
>DroYak_CAF1 26209 85 - 1
CGUUCAAGAGUCCUGGAUCUGGUCCUG------CU---------AGUGCGCCUGCAAGCUGGGACCAAAGCGCUUAACAUCCUUAUUGGCGCUGGGCCCA
.......(.((((......((((((((------((---------..(((....)))))).))))))).((((((.............)))))))))).). ( -29.52)
>consensus
CGUUCGAGGGUCCUGGUUCUGGUCCUG______CUGGGCCCGAAAGUGUGCCUGCAAACUGGGACCAAAGCGCUUAACAUCCUUUUUGGCGCUGGGCCCA
.......((((((((((((((((((..........)))))....(((.((....)).)))))))))).((((((.............)))))))))))). (-25.50 = -28.14 +   2.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:18 2006