Locus 5597

Sequence ID 2L_DroMel_CAF1
Location 15,872,225 – 15,872,337
Length 112
Max. P 0.885253
window8885

overview

Window 5

Location 15,872,225 – 15,872,337
Length 112
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.18
Mean single sequence MFE -29.92
Consensus MFE -21.87
Energy contribution -23.73
Covariance contribution 1.86
Combinations/Pair 1.19
Mean z-score -3.04
Structure conservation index 0.73
SVM decision value 0.94
SVM RNA-class probability 0.885253
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15872225 112 - 22407834
AUGGCCACAAUACAGUUGCUGAAUGCAGUUGACAGUUUUAUAAUGACGUUCAUUAUGGAAGCGGGCAAUUAAUUUCUUUUAAUUGCCCAGGUGCA---UUAA--AAAAAAA-AU--AGCA
..(((.((......)).))).((((((.((....(((((((((((.....)))))).)))))((((((((((......)))))))))))).))))---))..--.......-..--.... ( -32.50)
>DroSec_CAF1 45716 114 - 1
AUGGCCACAAUACAGUUGCUGAAUGCAGUUGACAGUUUUAUAAUGACGUUCAUUAUGGAAGCGGGCAAUUAAUUUCUUUUAAUUGCCCAGGUGCA---UCAAAAAAAAAAA-AU--AGCA
...(((......((..(((.....)))..))...(((((((((((.....)))))).)))))((((((((((......)))))))))).)))...---.............-..--.... ( -31.30)
>DroSim_CAF1 45777 110 - 1
AUGGCCACAAUACAGUUGCUGAAUGCAGUUGACAGUUUUAUAAUGACGUUCAUUAUGGAAGCGGGCAAUUAAUUUCUUUUAAUUGCCCAGGUGCA---U----AAAAAAAA-AU--AGCA
((((((......((..(((.....)))..))...(((((((((((.....)))))).)))))((((((((((......)))))))))).))).))---)----........-..--.... ( -31.80)
>DroEre_CAF1 35779 110 - 1
AUGGCCACAAUACAGUUGCUGAAUGCAGUUGACAGUUUUAUAAUGACGUUCAUUAUGGAAGCAGGCAAUUAAUUUCUUUUAAUUGCCCAGGUGUG---UCAA----AAAAA-GU--AACA
.(((((((....((..(((.....)))..))...(((((((((((.....)))))).))))).(((((((((......)))))))))...))).)---))).----.....-..--.... ( -30.90)
>DroYak_CAF1 20428 111 - 1
AUGGCCACAAUACAAUUGCUGAAUGCAGUUGACAGUUUUAUAAUGACGUUCAUUAUGGAAGCGGGCAAUUAAUUUCUCUUAAUUGCCCAGGUGCG---UCAA----AAUAAUAU--AGCA
.(((((((....(((((((.....)))))))...(((((((((((.....)))))).)))))((((((((((......))))))))))..))).)---))).----........--.... ( -37.20)
>DroPer_CAF1 63505 102 - 1
ACGUCCAUA-------------AUGCAGUUGACAACUCAAUAAUGACGUUCAAUGUGGCAGCAGGUAAUUAAUUUCUUUGAAUGUUUCAGGUUCAGAAUCAA----AGGAA-AUCAAGCC
..(((((((-------------((((((((((....)))))..)).))))..))).)))....(((......(((((((((....(((.......)))))))----)))))-.....))) ( -15.80)
>consensus
AUGGCCACAAUACAGUUGCUGAAUGCAGUUGACAGUUUUAUAAUGACGUUCAUUAUGGAAGCGGGCAAUUAAUUUCUUUUAAUUGCCCAGGUGCA___UCAA____AAAAA_AU__AGCA
...(((......(((((((.....)))))))...(((((((((((.....)))))))).)))((((((((((......)))))))))).)))............................ (-21.87 = -23.73 +   1.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:11 2006