Locus 5595

Sequence ID 2L_DroMel_CAF1
Location 15,868,800 – 15,868,900
Length 100
Max. P 0.868817
window8880

overview

Window 0

Location 15,868,800 – 15,868,900
Length 100
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 80.60
Mean single sequence MFE -28.01
Consensus MFE -15.72
Energy contribution -17.70
Covariance contribution 1.98
Combinations/Pair 1.30
Mean z-score -2.58
Structure conservation index 0.56
SVM decision value 0.86
SVM RNA-class probability 0.868817
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15868800 100 - 22407834
UUACUAGUUUCGGCCUCAUGAAAUCGCUUAAUGCAAAUGCGACUAUUUUUGGCAACAUUGCAUGAAUAUUUGUGA-UAUUGAUUCAUUGGGCUGAUAACGU
......((((((((((.((((((((((..((((...((((((.......((....))))))))...)))).))))-).....))))).))))))).))).. ( -27.81)
>DroSec_CAF1 42424 94 - 1
UUACUAGUUUCGGCCUCAUGAAAUCGCUUAAUGCAAAUGCGACUAUUUUUGGCAACAAUGAGUGAAUAUUUGUGU-UAUUGAUUCAUUGGGCC------GG
..........((((((.(((((.(((..(((((((((((..(((....(((....)))..)))...)))))))))-)).)))))))).)))))------). ( -31.10)
>DroSim_CAF1 42381 100 - 1
UUACUAGUUUCGGCCUCAUGAAAUCGCUUAAUGCAAAUGCGACUAUUUUUGGCAACAAUGAAUGAAAAUUUGUGU-UAUUGAUUCAUUGGGCCGAUAGCGG
......((((((((((.(((((.(((..((((((((((.....((((((((....))).)))))...))))))))-)).)))))))).))))))).))).. ( -32.70)
>DroEre_CAF1 32367 99 - 1
UUACUAGUUUUGGCCCUUUGAAAUUGCUUAAUGCAAAUGGGCGGA-UUUUGGCAACAAUGCAUGAAUAUUUGUGU-UAUUGAUUCAUUGGGCCGAUGGCGG
......((((((((((..((((......(((((((((((..((..-..(((....)))....))..)))))))))-))....))))..))))))).))).. ( -32.90)
>DroYak_CAF1 16907 100 - 1
UUACUAGUUUUGGCCUCUUGAAAUAGCUUAAUGUAAAUGGGACUAUUUUUGGCAACAAUGCAUAAAUAUUUGUGU-UUUUAAUUCAUGGAGCCUAUAGCGG
......(((..(((..(.((((.(((...((..((((((.........(((....)))........))))))..)-).))).)))).)..)))...))).. ( -19.73)
>DroPer_CAF1 59695 100 - 1
UUACCGGCUCUGGCCUCAAGGAAGUGCAGCAUGCUAAUUGCACAAUUUUUGGCAACAAUGGGUAAAUAAUUGAGUUUAUUGAUUCAUUAGGC-AAGAACGC
....((..(((.((((((((((.((((((........))))))..)))))).....(((((((.(((((......))))).)))))))))))-.))).)). ( -23.80)
>consensus
UUACUAGUUUCGGCCUCAUGAAAUCGCUUAAUGCAAAUGCGACUAUUUUUGGCAACAAUGCAUGAAUAUUUGUGU_UAUUGAUUCAUUGGGCCGAUAGCGG
.........(((((((.(((((.(((....(((((((((.........(((....)))........)))))))))....)))))))).)))))))...... (-15.72 = -17.70 +   1.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:06 2006