Locus 5593

Sequence ID 2L_DroMel_CAF1
Location 15,867,575 – 15,867,675
Length 100
Max. P 0.927011
window8877

overview

Window 7

Location 15,867,575 – 15,867,675
Length 100
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 83.26
Mean single sequence MFE -25.28
Consensus MFE -22.46
Energy contribution -22.10
Covariance contribution -0.36
Combinations/Pair 1.25
Mean z-score -2.11
Structure conservation index 0.89
SVM decision value 1.18
SVM RNA-class probability 0.927011
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15867575 100 - 22407834
CC-AGCAUAACAUUCUCAAUUCCUUGGCGGCAGAAUUCCAUAAAUAAACUUACGGAAUGUUUCUGUUUGG-CAACUUUUUGUCGCCGCAGGGACUGUCAUUA-----------
..-.............((.((((((((((((((((((((.(((......))).)))))..........(.-...)..)))))))))).))))).))......----------- ( -26.10)
>DroPse_CAF1 32295 113 - 1
CAUUUUAUUACAUCUGCAAUUCCUCGGUGACUUGAGCCCAUAAAUAUGCUUCCAAAAUGUUUCUUUUCGGCCAACUUUGUGCCACCGCAGGGACUGUCAUUAUGUUAAUGCUC
.....((((((((..(((.(((((((((((((((.(((...((((((.........))))))......))))))....))..))))).))))).)))....))).)))))... ( -21.10)
>DroSec_CAF1 41203 100 - 1
CC-AGCAUAACAUUCUCAAUUCCUUGGCGGCAGGAUUCCAUAAAUAAACUUACAGAAUGUUUCUUUCUGG-CAACUUUUUGUCGCCGCAGGGACUGUCAUUA-----------
..-.............((.((((((((((((((((..(((.(((.((((.........)))).))).)))-.....))))))))))).))))).))......----------- ( -25.50)
>DroSim_CAF1 41164 100 - 1
CC-AGCAUAACAUUCUCAAUUCCUUGGCGGCGGAAUUCCAUAAAUAAACUUACAGAAUGUUUCUUUCUGG-CAACUUUUUGUCGCCGCAGGGACUGUCAUUA-----------
..-.............((.((((((((((((((((..(((.(((.((((.........)))).))).)))-.....))))))))))).))))).))......----------- ( -25.10)
>DroEre_CAF1 31118 100 - 1
CC-AGCAUAACAUUCUCAAUUCCUUGGCGGCAGAAUUCCAUAAAUAAACUUACGGAAUGUUUCUUUCUGG-CAACUUUUUGUCGCCGCAGGGACUGUCAUUA-----------
..-.............((.((((((((((((((((((((.(((......))).)))))..........(.-...)..)))))))))).))))).))......----------- ( -26.10)
>DroYak_CAF1 15672 100 - 1
CC-GGCUCUAUAUCCUCAAUUCCUUGGCGGCAAAAUUCCAUAAAUAAGCUUACGGAAUGUUUCUUUUUGG-AAACUUUUUGUCGCCGCAGCGACUGCCAUUA-----------
..-(((..............(((((((((((((((((((.(((......))).)))))((((((....))-))))..)))))))))).)).))..)))....----------- ( -27.79)
>consensus
CC_AGCAUAACAUUCUCAAUUCCUUGGCGGCAGAAUUCCAUAAAUAAACUUACAGAAUGUUUCUUUCUGG_CAACUUUUUGUCGCCGCAGGGACUGUCAUUA___________
................((.((((((((((((((((..(((.(((.((((.........)))).))).)))......))))))))))).))))).))................. (-22.46 = -22.10 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:03 2006