Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,866,603 – 15,866,711 |
Length | 108 |
Max. P | 0.635006 |
Location | 15,866,603 – 15,866,711 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 79.73 |
Mean single sequence MFE | -22.08 |
Consensus MFE | -15.03 |
Energy contribution | -14.95 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.25 |
Mean z-score | -1.34 |
Structure conservation index | 0.68 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635006 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15866603 108 - 22407834 UCUCCCAUCGAUUUACCGUUUUACCAACCA---------AACCUCUUGUUUCAUAUCAUUGAUGUUUGACAGCAAUCAGUGCGAUAAAAUAGAUUGUCAUUAUCAUCAGCGGGACUU ..((((...........((((........)---------)))................((((((..(((..((((((.((........)).))))))..))).)))))).))))... ( -18.00) >DroPse_CAF1 31561 107 - 1 UUUCCCAUCC--UU--------GGGGAUGCAAUUUGUGUAUCGUCCUGGCUGUUCUUCCUGGUGUUUGACGGCAAUCAGAGCUAUAAAGUGGAUUGUCAUUAUCAUCAUGAGGGCAU ...((((...--.)--------)))((((((.....))))))(((((((........))(((((..(((.(((((((...(((....))).))))))).))).)))))..))))).. ( -33.20) >DroSec_CAF1 40364 99 - 1 UCUCCCACCGAUUA--------ACCAACCA---------AACCUCUUGUUUCAUAUCAUUGAUGUUUGACAGCAAUCAGUGCGAUAAAAUAGAUUGUCAUUAUCAUCAGUGGGACU- ..((((((.(((..--------......((---------(((.((.((........))..)).)))))...((((((.((........)).)))))).......))).))))))..- ( -21.60) >DroSim_CAF1 40051 99 - 1 UCUCCCAGCGAUUA--------ACCAACCA---------AACCUCUUGUUUCAUAUCAUUGAUGUUUGACAGCAAUCAGUGCGAUAAAAUAGAUUGUCAUUAUCAUCAGUGGGACU- ..((((...(((..--------......((---------(.....)))......)))(((((((..(((..((((((.((........)).))))))..))).)))))))))))..- ( -19.24) >DroEre_CAF1 30647 99 - 1 UCUUUCACCGAUUU--------ACCGACCA---------AACCUCUUGUUUCAUAUCAUUGAUGUUUGACAGCAAUCAGAGCGAUAAAAUAGAUUGCCAUUAUCGUCAGUGGGAGC- .((..(((.(((..--------......((---------(((.((.((........))..)).)))))...((((((..............)))))).......))).)))..)).- ( -19.44) >DroYak_CAF1 15105 99 - 1 UCUCCCAUCGAUUU--------ACCAACCA---------AACCUCUUGUUUCAUAUCAGUGAUGUUUGACAGCAAUCAGUGCGAUAAAAUAGAUUGUCAUUAUCAUCAGUGGGACU- ..((((((.(((..--------......((---------(((.(((((........))).)).)))))...((((((.((........)).)))))).......))).))))))..- ( -21.00) >consensus UCUCCCAUCGAUUU________ACCAACCA_________AACCUCUUGUUUCAUAUCAUUGAUGUUUGACAGCAAUCAGUGCGAUAAAAUAGAUUGUCAUUAUCAUCAGUGGGACU_ .......................................................(((((((((..(((..((((((.((........)).))))))..))).)))))))))..... (-15.03 = -14.95 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:02 2006