Locus 5591

Sequence ID 2L_DroMel_CAF1
Location 15,862,222 – 15,862,319
Length 97
Max. P 0.689132
window8875

overview

Window 5

Location 15,862,222 – 15,862,319
Length 97
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.76
Mean single sequence MFE -31.80
Consensus MFE -20.49
Energy contribution -20.28
Covariance contribution -0.22
Combinations/Pair 1.32
Mean z-score -1.48
Structure conservation index 0.64
SVM decision value 0.32
SVM RNA-class probability 0.689132
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15862222 97 - 22407834
UGACGGGGAAAA----------AUGGAGUUUGGCCAGGGUACAGGACAUUUUCGUCCUCCGUGUCCUGGGCCU-----UUUCAGU-----UUAUUUUGUCGCUGCAGCUGU---UUGUUA
.(((((((.(((----------.(((((...(((((((..(((((((......)))))..))..))).)))).-----))))).)-----)).)))))))((....))...---...... ( -33.00)
>DroPse_CAF1 24633 105 - 1
UGUGGAAGAGAACGAGAACCUACCGGAGUCCUGAGUGGGCCUACAACAUUUUAGUC-UCCAUGUCUGGGCCCUUGCCAUUUCGGU-----UCAUUUUG-CGCUGUCGUUGU---U-----
.(((.((((((((((((....(((((....))).))(((((((..((((.......-...)))).)))))))......)))).))-----)).)))).-))).........---.----- ( -26.00)
>DroSec_CAF1 36217 97 - 1
UGACGGGGAAAA----------AUGGAGUUUGGCCAGGGUACAGGACAUUUUCGUCCUCCGUGUCCUGGGCCU-----UUUCAGU-----UUAUUUUGUCGCUGCCGCUGU---UUGUUA
.(((((((.(((----------.(((((...(((((((..(((((((......)))))..))..))).)))).-----))))).)-----)).)))))))((....))...---...... ( -32.70)
>DroSim_CAF1 35887 97 - 1
UGACGGGGAAAA----------AUGGAGUUUGGCCAGGGUACAGGACAUUUUCGUCCUCCGUGUCCUGGGCCU-----UUUCAGU-----UUAUUUUGUCGCUGCCGCUGU---UUGUUA
.(((((((.(((----------.(((((...(((((((..(((((((......)))))..))..))).)))).-----))))).)-----)).)))))))((....))...---...... ( -32.70)
>DroEre_CAF1 26638 105 - 1
UGACGGGGAAAA----------AUGGAGUUUGGCCAGAGCACAGGACAUUUUCGUCCUUCGUGUCCUGGGCCU-----UUUCAGUCCCACUUAUUUUGUCACUGCCGCUGUUGUUUGUUA
(((((((((...----------.(((((...((((((..((((((((......)))))..)))..)).)))).-----))))).))))........)))))................... ( -32.40)
>DroYak_CAF1 10836 100 - 1
UGACGGGGAAAA----------AUGGAGUUUGGCCAGGGUCCAGGACAUUUUUGUCCUCCAUGUCCUGGGCCU-----UUUCAGU-----UUAUUCUGUCACUGCCGCUGUUGCUUGUUA
((((((((.(((----------.(((((...((((.(((.(.((((((....))))))....).))).)))).-----))))).)-----)).)))))))).....((....))...... ( -34.00)
>consensus
UGACGGGGAAAA__________AUGGAGUUUGGCCAGGGUACAGGACAUUUUCGUCCUCCGUGUCCUGGGCCU_____UUUCAGU_____UUAUUUUGUCGCUGCCGCUGU___UUGUUA
((((((((.((............(((((...((((((((((((((((......)))))..))))))).))))......))))).......)).))))))))................... (-20.49 = -20.28 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:01 2006