Locus 5590

Sequence ID 2L_DroMel_CAF1
Location 15,859,434 – 15,859,533
Length 99
Max. P 0.875911
window8874

overview

Window 4

Location 15,859,434 – 15,859,533
Length 99
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 87.94
Mean single sequence MFE -29.70
Consensus MFE -22.18
Energy contribution -23.29
Covariance contribution 1.11
Combinations/Pair 1.04
Mean z-score -2.95
Structure conservation index 0.75
SVM decision value 0.89
SVM RNA-class probability 0.875911
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15859434 99 + 22407834
GUUAUGACAAUGUCUAUUCUUCAGGUCAAUUCGGACAAUUUUCCACUGGGGGAUCUUUUCCCUUAGGACCGCCACCAUCAUC------UGGUGGAUGUUCACUCG
.....((((..............((((.....(((......))).((((((((.....)))))))))))).((((((.....------)))))).))))...... ( -31.80)
>DroSec_CAF1 31631 105 + 1
GUUUUGAAAAUACCUUUUCUUCAAGUCAAUUCGGACCAUUUUCCACUGGGGAAUUCUUUCCCUUAGGACCACCACCAUCAUCAUCAGGUGGAGGAUGUUCACUCG
(.((((((...........)))))).).....((((.((((((((((((((((....))))))..((....)).............))))))))))))))..... ( -26.20)
>DroSim_CAF1 32704 105 + 1
GUUUUGACAAUACCUUUUCUUCAAGUCAAUUCGGACCAUUUUCCACUGGGGAAUUCUUUCCCUUAGGACCACCACCAUCAUCAUCAGGUGGAGGAUGUUCCCUCG
(..(((((................)))))..)(((.(((((((((((((((((....))))))..((....)).............))))))))))).))).... ( -31.09)
>consensus
GUUUUGACAAUACCUUUUCUUCAAGUCAAUUCGGACCAUUUUCCACUGGGGAAUUCUUUCCCUUAGGACCACCACCAUCAUCAUCAGGUGGAGGAUGUUCACUCG
(..(((((................)))))..)((((.....(((...((((((....))))))..)))((.(((((..........))))).))..))))..... (-22.18 = -23.29 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:00 2006