Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,741,255 – 1,741,356 |
Length | 101 |
Max. P | 0.677323 |
Location | 1,741,255 – 1,741,356 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.06 |
Mean single sequence MFE | -21.96 |
Consensus MFE | -10.01 |
Energy contribution | -11.95 |
Covariance contribution | 1.94 |
Combinations/Pair | 1.24 |
Mean z-score | -2.23 |
Structure conservation index | 0.46 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677323 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1741255 101 + 22407834 AUUAAUUUGCUUGCAACAAGUAAA-----UAAUUUGUA------GUCAAAU---AUCAACAUA---AAAUGAA--GUUAACGCCCCAGCGAGCAAACAGGUCGUUAAUUCGAAAGCGGCU .....(((((((((.((((((...-----..)))))).------....(((---.(((.....---...))).--))).........)))))))))..(((((((........))))))) ( -22.30) >DroSim_CAF1 4868 101 + 1 AUUAAUUUGCUUGCAACAAAUAAA-----CAAUUUGUA------GUCAAAU---AUCAACAUU---AAAUGAA--GUUAACGCCCCAGCGAGCAAACAGGUCGUUAAUUCGAAAGCGGCU .....(((((((((.((((((...-----..)))))).------....(((---.(((.....---...))).--))).........)))))))))..(((((((........))))))) ( -22.30) >DroWil_CAF1 13909 115 + 1 AUUAC-AUAUUCGCAAU--GUAAACCAUGCAUUUUGUUUUCUCAUUCAAUUUUUCUAAACAUUUAAAAAUGAAUGGUUAACGCCCCA-CAUGAACACAUGU-AUCAAUUCUAUUGAGAGA .....-...(((.((((--((.((((((.((((((((((.................))))).....))))).)))))).)).....(-((((....)))))-.........)))).))). ( -17.63) >DroYak_CAF1 4900 101 + 1 UUUAAUUUGCUCGCAACAAAUAAA-----UAAUUUGUA------GUCAAAU---AGCAACAUU---AAAUGAA--GUUAACGCCCCAGCGAGCAAACAGGUCGUUAAUUCUGAAGCGGCU .....(((((((((.((((((...-----..)))))).------......(---(((..(((.---..)))..--))))........)))))))))..(((((((........))))))) ( -25.60) >consensus AUUAAUUUGCUCGCAACAAAUAAA_____CAAUUUGUA______GUCAAAU___AUCAACAUU___AAAUGAA__GUUAACGCCCCAGCGAGCAAACAGGUCGUUAAUUCGAAAGCGGCU .....(((((((((.((((((..........))))))......................(((......)))................)))))))))..(((((((........))))))) (-10.01 = -11.95 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:42 2006