Locus 5589

Sequence ID 2L_DroMel_CAF1
Location 15,858,732 – 15,858,843
Length 111
Max. P 0.884707
window8873

overview

Window 3

Location 15,858,732 – 15,858,843
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.22
Mean single sequence MFE -37.96
Consensus MFE -28.98
Energy contribution -30.78
Covariance contribution 1.80
Combinations/Pair 1.08
Mean z-score -2.07
Structure conservation index 0.76
SVM decision value 0.93
SVM RNA-class probability 0.884707
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15858732 111 + 22407834
AGAUUUGGUUUCUGAAAUCGCAUACGAAUGUUGGCCAAUUGGAUUUGGUUAGCCCAAGAGUUGGCCAAAGCCUGGGUGUGUGUGUUUGAAUGGACCUUAUCCAGGUUC---------UGA
.(((..((((..(..((.(((((((.....((((((((((...(((((.....))))))))))))))).((....))))))))).))..)..))))..))).......---------... ( -34.10)
>DroSec_CAF1 30945 120 + 1
AGAUUUGGUUUCUGAAAUCGCAUACGAAUGUUGGCCAAUUGGAUUUGGUUAGCCAAAGAGUUGGCCAAAGCCUGUGUGUGUGUGUUUGAAUGGACCUUAUCCAGGUUCGGGCUCGCCUGA
.(((..(((((.(.((((((((((((....((((((((((...(((((....))))).))))))))))......)))))))).)))).)..)))))..)))(((((........))))). ( -43.10)
>DroSim_CAF1 32018 120 + 1
AGAUUUGGUUUCUGAAAUCGCAUACGAAUGUUGGCCAAUUGGAUUUGGUUAGCCCAAGAGUUGGCCAAAGCCGUAGUGUGUGUGUUUGAAUGGACCUUAUCCAGGUUCGGGCCCGCCUGA
.(((..((((..(..((.((((((((....((((((((((...(((((.....)))))))))))))))........)))))))).))..)..))))..)))(((((........))))). ( -39.60)
>DroEre_CAF1 18226 102 + 1
AGAUUUGGUUUCUGAAAUCGCAUACGAAUGUUGGCCAAUUGGAUUUGGUUACCCCAAGAGUUGGCCAAAGCCCGUGUGUGUGUGCUUGCAUGGACCCUAUGC------------------
......((((..((....((((((((....((((((((((...(((((.....)))))))))))))))....))))))))........))..))))......------------------ ( -33.30)
>DroYak_CAF1 3256 116 + 1
AGAUUUGGUUUCUGAAAUCGCAAACGAAGGUUGGCCAAUUGGAUUUGGUUACCCCAAGAGUUGGCCAAAGCCUGUGU----GUGUUUGAAUGGACUUUGUCCAGGUUUGAGCACGCUUGA
.(((((........)))))((..(((.(((((((((((((...(((((.....))))))))))))))..)))).)))----(((((..(((((((...)))))..))..))))))).... ( -39.70)
>consensus
AGAUUUGGUUUCUGAAAUCGCAUACGAAUGUUGGCCAAUUGGAUUUGGUUAGCCCAAGAGUUGGCCAAAGCCUGUGUGUGUGUGUUUGAAUGGACCUUAUCCAGGUUCG_GC_CGC_UGA
.(((..((((..(..((.((((((((....((((((((((...(((((.....)))))))))))))))........)))))))).))..)..))))..)))(((((........))))). (-28.98 = -30.78 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:59 2006